src/utils/qa/chain.csh 1.31

1.31 2010/04/26 16:31:49 vanessa
changed what the tr command was looking for and added warning text alerting the user that the path could be wrong

Index: src/utils/qa/chain.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/chain.csh,v
retrieving revision 1.30
retrieving revision 1.31
diff -b -B -U 4 -r1.30 -r1.31
--- src/utils/qa/chain.csh	23 Apr 2010 21:55:57 -0000	1.30
+++ src/utils/qa/chain.csh	26 Apr 2010 16:31:49 -0000	1.31
@@ -384,14 +384,15 @@
 
 
 set OrgName=`hgsql -Ne "SELECT organism FROM dbDb WHERE NAME LIKE '$db%'" hgcentraltest` 
 
-set OrgName=`echo $OrgName | tr "[:upper:]" "[:lower:]"` 
+set OrgName=`echo $OrgName | tr '[A-Z]' '[a-z]'` 
 
 
 echo
 echo   "If the output doesn't match, put overrides in this file with the above output: " 
 echo   "/cluster/home/$USER/kent/src/hg/makeDb/trackDb/$OrgName/trackDb.chainNet.ra"
+echo   "*Note use the path name to guide you. It may not work perfectly in all cases."
 
 
 # -------------------------------------------------
 # to push to beta: