braney: changes by commit

branch to review (2010-04-19 to 2010-04-27) v230

• notes for relase1
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeGisPet.release1.notes.txt 1.1 - lines changed: 220, context: html, text, full: html, text
• separate it out
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra 1.1 - lines changed: 144, context: html, text, full: html, text
• make long labels fit in 80 chars
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.13 - lines changed: 80, context: html, text, full: html, text
• use our standard RNA-seq
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.8 - lines changed: 138, context: html, text, full: html, text
• some edits
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra 1.2 - lines changed: 34, context: html, text, full: html, text
• fix up long labels
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra 1.3 - lines changed: 12, context: html, text, full: html, text
• first pass
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html 1.1 - lines changed: 26, context: html, text, full: html, text
• make into HTML
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html 1.2 - lines changed: 61, context: html, text, full: html, text
• small change
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra 1.4 - lines changed: 1, context: html, text, full: html, text
• fix long labels
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra 1.5 - lines changed: 20, context: html, text, full: html, text
• add info about files.txt and md5sum to preamble
  • src/hg/encode/encodeLoad/doEncodeLoad.pl 1.76 - lines changed: 9, context: html, text, full: html, text
• changed long labels from "No Treatment" to w/None
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra 1.6 - lines changed: 5, context: html, text, full: html, text
• make hudsonalphaRnaSeq a separate include file
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.955 - lines changed: 143, context: html, text, full: html, text
• take out "Map Algorithm"
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.9 - lines changed: 1, context: html, text, full: html, text
• notes for release1
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeHudsonalphaRnaSeq.release1.notes.txt 1.1 - lines changed: 74, context: html, text, full: html, text
• add Clusters, make bam the alignment file type, only include fastq with read 1/2
  • src/hg/encode/DAFs/2.0/gisRnaPet.daf 1.3 - lines changed: 19, context: html, text, full: html, text
• release1 notes
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeBuOrchid.release1.notes.txt 1.1 - lines changed: 54, context: html, text, full: html, text
• fix up some problems
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeBuOrchid.release1.notes.txt 1.2 - lines changed: 10, context: html, text, full: html, text