bsuh: changes by file

branch to review (2010-04-19 to 2010-04-27) v230

• src/hg/encode/utils/elandExtToSAM/complex_eland_extended.txt
  • 1.1 lines changed: 8, context: html, text, full: html, text
    More complicated eland extended data file I found off the web at http://nextgenseq.blogspot.com/2008/10/file-formats.html
• src/hg/encode/utils/elandExtToSAM/elandExtToSAM.py
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Changed parser so that name doesn't have to start with chr
  • 1.1 lines changed: 133, context: html, text, full: html, text
    Initial checkin of eland extended to SAM format converter written for Stanford Lab
• src/hg/encode/utils/elandExtToSAM/sample_eland_extended.txt
  • 1.2 lines changed: 0, context: html, text, full: html, text
    File was flagged as have DOS carriage returns - filtered out via dos2unix
  • 1.1 lines changed: 10, context: html, text, full: html, text
    Sample eland extended file provided by pcayting@stanford.edu