src/hg/encode/encodeMkGeoPkg/encodeMkGeoPkg 1.4

Index: src/hg/encode/encodeMkGeoPkg/encodeMkGeoPkg
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/encodeMkGeoPkg/encodeMkGeoPkg,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 4 -r1.3 -r1.4
--- src/hg/encode/encodeMkGeoPkg/encodeMkGeoPkg	13 May 2010 08:25:11 -0000	1.3
+++ src/hg/encode/encodeMkGeoPkg/encodeMkGeoPkg	13 May 2010 08:32:16 -0000	1.4
@@ -301,8 +301,14 @@
     my $provider = $cellLineInfo{"vendorName"};
     my $growthProtocolUrl = "http://genome.ucsc.edu/ENCODE/protocols/cell/" . $cellLineInfo{"protocol"};
     my $growthProtocol = "Cells were grown according to the approved ENCODE cell culture protocols: $growthProtocolUrl";
 
+    my $extractProtocolUrl = "http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=$database&g=$compositeName";
+    my $extractProtocol    = "For extraction protocol details see: $extractProtocolUrl";
+
+    my $dataProcessingUrl = "http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=$database&g=$compositeName";
+    my $dataProcessing    = "For data processing details see: $dataProcessingUrl";
+
     my $dataType = $dataTypeCleaner{getSameMetadata("dataType", @currentMetadata)};
     my $molecule = $dataTypeMolecule{$dataType};
 
     my $libraryStrategy = $dataTypeLibraryStrategy{$dataType};
@@ -345,10 +351,10 @@
     #    }
     #}
     print "!Sample_growth_protocol = $growthProtocol" . "\n";
     print "!Sample_molecule = $molecule" . "\n";
-    print "!Sample_extract_protocol = [required]" . "\n";
-    print "!Sample_data_processing = [required; list_of_values]" . "\n";
+    print "!Sample_extract_protocol = $extractProtocol" . "\n";
+    print "!Sample_data_processing = $dataProcessing" . "\n";
     print "!Sample_library_strategy = $libraryStrategy" . "\n";
     print "!Sample_library_source = $ibrarySource" . "\n";
     print "!Sample_library_selection = $ibrarySelection" . "\n";
     print "!Sample_instrument_model = [required]" . "\n";