src/hg/makeDb/doc/hg18.txt 1.419

Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.418
retrieving revision 1.419
diff -b -B -U 4 -r1.418 -r1.419
--- src/hg/makeDb/doc/hg18.txt	13 May 2010 00:13:15 -0000	1.418
+++ src/hg/makeDb/doc/hg18.txt	14 May 2010 20:47:06 -0000	1.419
@@ -30106,4 +30106,24 @@
     # Load the track
 nohup retroFinder-1.16/scripts/ucscRetroStep6.sh DEF
 #add ucscRetroAli to trackDb.ra 
 
+#############################################################################
+# NEANDERTAL TRACKS (DONE 5/6/10 angie)
+    # Ed Green and Hernan Burbano contributed data for several tracks
+    # in advance of the publication in Science of the Neandertal genome
+    # sequence and analysis.  These tracks were built on a private,
+    # access-controlled server (genome-nt) and then transferred to hgwdev
+    # and quickly pushed to hgwbeta and RR when the embargo lifted.
+    # Full descriptions are in a separate file, hg18.nt.txt.
+    # Track tables, in case anybody searches for them in here:
+    # H-C Coding Diffs:	ntHumChimpCodingDiff
+    # Sel Swp Scan (S):	ntSssZScorePMVar
+    # 5% Lowest S:	ntSssTop5p
+    # S SNPs:	 	ntSssSnps 
+    # Cand. Gene Flow:	ntOoaHaplo
+    # Neandertal Cntgs:	bamAll bamFeld1 bamMez1 bamSid1253 bamVi33dot16 bamVi33dot25 bamVi33dot26
+    # Neandertal Seq:	bamSLFeld1 bamSLMez1 bamSLSid1253 bamSLVi33dot16 bamSLVi33dot25 bamSLVi33dot26 
+    # Modern Human Seq:	bamMMS4 bamMMS5 bamMMS6 bamMMS7 bamMMS8
+    # Neandertal Mito:	ntMito
+
+#############################################################################