src/hg/lib/ntOoaHaplo.as 1.1

Index: src/hg/lib/ntOoaHaplo.as
===================================================================
RCS file: src/hg/lib/ntOoaHaplo.as
diff -N src/hg/lib/ntOoaHaplo.as
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/ntOoaHaplo.as	14 May 2010 19:39:04 -0000	1.1
@@ -0,0 +1,19 @@
+table ntOoaHaplo
+"Candidate regions for gene flow from Neandertal to non-African modern humans (Table 5 of Green RE et al., Science 2010)"
+    (
+    string chrom;      "Reference sequence chromosome"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Qualitative assessment (OOA = out of africa, COS = cosmopolitan)"
+    uint   score;      "For BED compatibility: Score from 0-1000 (placeholder = 0)"
+    char[1] strand;    "For BED compatibility: + or - (placeholder = +)"
+    uint thickStart;   "For BED compatibility: Start of where display should be thick"
+    uint thickEnd;     "For BED compatibility: End of where display should be thick"
+    uint reserved;     "itemRgb color code"
+    float  st;         "Estimated ratio of OOA/African gene tree depth"
+    float  ooaTagFreq; "Average frequency of tag in OOA clade"
+    ubyte  am;          "Neandertal (M)atches OOA-specific clade (Ancestral)"
+    ubyte  dm;          "Neandertal (M)atches OOA-specific clade (Derived)"
+    ubyte  an;          "Neandertal does (N)ot match OOA-specific clade (Ancestral)"
+    ubyte  dn;          "Neandertal does (N)ot match OOA-specific clade (Derived)"
+    )