braney: changes by commit
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review to branch (2010-05-11 to 2010-05-18) v231
- take out parallel BAM validation path that was broken
- src/hg/encode/encodeValidate/doEncodeValidate.pl 1.224 - lines changed: 17, context: html, text, full: html, text
- moving trackDb.enc.ra to here
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra 1.1 - lines changed: 1331, context: html, text, full: html, text
- moving this to trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/human/hg19/trackDb.enc.ra 1.21 - lines changed: 1331, context: html, text, full: html, text
- taking LongPolyA+ out of the sort order and dimensions since it is always set in the data for GIS RNA-seq
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.965 - lines changed: 5, context: html, text, full: html, text
- moved these down into alpha
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeBroadChipSeq.ra 1.2 - lines changed: 11164, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeChromatinMap.ra 1.2 - lines changed: 12139, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeHudsonalphaChipSeq.ra 1.2 - lines changed: 16385, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeHudsonalphaRnaSeq.ra 1.3 - lines changed: 279, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeUwChIPSeq.ra 1.2 - lines changed: 12796, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeUwDGF.ra 1.2 - lines changed: 469, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeUwDnaseSeq.ra 1.2 - lines changed: 7608, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/wgEncodeYaleChIPseq.ra 1.2 - lines changed: 24601, context: html, text, full: html, text
- moved these down from above
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra 1.1 - lines changed: 11164, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra 1.1 - lines changed: 12139, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra 1.1 - lines changed: 16385, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaRnaSeq.ra 1.1 - lines changed: 279, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwChIPSeq.ra 1.1 - lines changed: 12796, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwDGF.ra 1.1 - lines changed: 469, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwDnaseSeq.ra 1.1 - lines changed: 7608, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra 1.1 - lines changed: 24601, context: html, text, full: html, text
- hopefully updating to the right value
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaRnaSeq.ra 1.2 - lines changed: 2, context: html, text, full: html, text
- add metadata from fileDb.ra in download dirs
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra 1.2 - lines changed: 4037, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra 1.2 - lines changed: 825, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeRikenCage.ra 1.2 - lines changed: 397, context: html, text, full: html, text
- new
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeAffyRnaChip.ra 1.1 - lines changed: 0, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBuOrchid.ra 1.1 - lines changed: 0, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra 1.1 - lines changed: 3043, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra 1.1 - lines changed: 480, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra 1.1 - lines changed: 982, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeDukeAffyExonArray.ra 1.1 - lines changed: 1045, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisDnaPet.ra 1.1 - lines changed: 579, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra 1.1 - lines changed: 1484, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisRnaSeq.ra 1.1 - lines changed: 445, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHelicosRnaSeq.ra 1.1 - lines changed: 55, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaCnv.ra 1.1 - lines changed: 103, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethyl27.ra 1.1 - lines changed: 97, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra 1.1 - lines changed: 1611, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeRikenCage.ra 1.1 - lines changed: 1044, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSangerGencode.ra 1.1 - lines changed: 0, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSunyalbanyRnaGeneChip.ra 1.1 - lines changed: 134, context: html, text, full: html, text
- moved from trackDb.enc.ra
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra 1.1 - lines changed: 423, context: html, text, full: html, text
- moved to trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.enc.ra 1.10 - lines changed: 423, context: html, text, full: html, text
- moved trackDb.enc.ra to trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.92 - lines changed: 1, context: html, text, full: html, text
- add information about the clustering process
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html 1.11 - lines changed: 2, context: html, text, full: html, text
- change how the two sequences are printed out for split aligns
- src/hg/hgc/hgc.c 1.1621 - lines changed: 1, context: html, text, full: html, text
- add color to H1hesc for GIS RNA-seq
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.967 - lines changed: 5, context: html, text, full: html, text
- add some more text about the alignments to describe their color
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html 1.8 - lines changed: 6, context: html, text, full: html, text
- conform to the threeStateTrackDb naming scheme
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.new.ra 1.1 - lines changed: 721, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra 1.1 - lines changed: 699, context: html, text, full: html, text
- move RikenCage includes to the new policy
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.969 - lines changed: 2, context: html, text, full: html, text
- fixed problems with metadata
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeAffyRnaChip.ra 1.2 - lines changed: 1873, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBuOrchid.ra 1.2 - lines changed: 35, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSangerGencode.ra 1.2 - lines changed: 55, context: html, text, full: html, text
- add these in the alpha dir
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra 1.1 - lines changed: 1399, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra 1.1 - lines changed: 467, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra 1.1 - lines changed: 2639, context: html, text, full: html, text
- moving these down to the alpha directory
- src/hg/makeDb/trackDb/human/hg19/metaDb/wgEncodeHaibTfbs.ra 1.3 - lines changed: 1399, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/wgEncodeSydhHistone.ra 1.2 - lines changed: 467, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/wgEncodeSydhTfbs.ra 1.3 - lines changed: 2639, context: html, text, full: html, text
- change Alignments view to be called Tags
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.html 1.18 - lines changed: 2, context: html, text, full: html, text
- change alignments view to Tags view
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.new.ra 1.2 - lines changed: 1, context: html, text, full: html, text
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