src/blat/version.doc 1.77

1.77 2010/05/15 06:33:09 galt
Dealing with primers that match but dangle off the ends of the chrom

Index: src/blat/version.doc
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/blat/version.doc,v
retrieving revision 1.76
retrieving revision 1.77
diff -b -B -U 4 -r1.76 -r1.77
--- src/blat/version.doc	5 Mar 2010 00:31:03 -0000	1.76
+++ src/blat/version.doc	15 May 2010 06:33:09 -0000	1.77
@@ -7,8 +7,9 @@
      o (in 34x5) Made gfServer calculate repMatch based on stepSize/tileSize combination the way blat does
        rather than just being good for stepSize 11.
      o (in 34x6) Fixed negative strand pcr psl output
      o (in 34x7) Made it check and error out if the same name is reused in the target database.
+     o (in 34x8) Truncate in output PCR primers that dangle off target chrom ends.
      
 
 34:
      o (in 33x1) Put in check for two bit files with more than 4 gig.