src/hg/instinct/bioInt2/grabData.c 1.8

Index: src/hg/instinct/bioInt2/grabData.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/bioInt2/grabData.c,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 4 -r1.7 -r1.8
--- src/hg/instinct/bioInt2/grabData.c	5 Jun 2009 20:55:40 -0000	1.7
+++ src/hg/instinct/bioInt2/grabData.c	7 May 2010 00:37:30 -0000	1.8
@@ -18,20 +18,23 @@
 	 "usage:\n"
 	 "   grabData [options] table\n"
 	 "      -clinical    get clinical data corresponding to table\n"
 	 "      -transpose   samples as rows, features as columns\n"
+	 "      -dataOnly    only report the data from table, without the stats\n"
 	 );
 }
 
 char db[128] = "bioInt";
 char localDb[128] = "localDb";
 
 boolean getClinical = FALSE;
 boolean transpose = FALSE;
+boolean dataOnly = FALSE;
 
 static struct optionSpec options[] = {
     {"clinical", OPTION_BOOLEAN},
     {"transpose", OPTION_BOOLEAN},
+    {"dataOnly", OPTION_BOOLEAN},
     {NULL, 0}
 }; 
 
 struct valConf {
@@ -145,9 +148,12 @@
 	el = hashLookup(hash, sl->name);
 	if (el)
 	    {
 	    struct valConf *vc = el->val;
+	    if (dataOnly==FALSE)
 	    fprintf(f, "%f,%f", vc->val, vc->conf);
+	    else
+		fprintf(f, "%f", vc->val);
 	    }
 	if (sl->next)
 	    fprintf(f, "\t");
 	}
@@ -411,8 +417,11 @@
 
 if (optionExists("transpose"))
     transpose = TRUE;
 
+if (optionExists("dataOnly"))
+    dataOnly = TRUE;
+
 grabData(argv[1]);
 
 return 0;
 }