src/hg/makeDb/doc/hg18.txt 1.415

1.415 2010/05/07 05:31:45 kent
Adding a few more steps to regulation track.
Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.414
retrieving revision 1.415
diff -b -B -U 4 -r1.414 -r1.415
--- src/hg/makeDb/doc/hg18.txt	5 May 2010 00:49:41 -0000	1.414
+++ src/hg/makeDb/doc/hg18.txt	7 May 2010 05:31:45 -0000	1.415
@@ -16407,11 +16407,13 @@
       cut -f 2 peak.lst > file.lst
       foreach i (`cat file.lst`)
           wget http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/$i
       end
+      regClusterBedExpCfg peak.lst -encodeList peak.cfg
       # Then edit peak.cfg to make sure all cell lines have uniq letters
-      regClusterBedExpCfg peak.lst -encodeList peak.cfg peak.bed peak.exps
-      hgLoadBed hg18 wgEncodeRegTfbsClustered peak.bed
+      hgBedsToBedExps peak.cfg peak.bed peak.exps
+      awk '$2 != $3' peak.bed > filtered.bed
+      hgLoadBed hg18 wgEncodeRegTfbsClustered filtered.bed
       hgLoadSqlTab hg18 wgEncodeRegTfbsCells ~/kent/src/hg/lib/expRecord.sql peak.exps
 
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 # CGAP SAGE (DONE 2007-04-17 Andy)