src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c 1.6

Index: src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c	6 May 2010 17:53:41 -0000	1.5
+++ src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c	6 May 2010 18:02:38 -0000	1.6
@@ -185,17 +185,23 @@
     for (i=0; i<sourceCount; ++i)
         levels[i] = 0;
 
     /* Set levels according to sourceSite list. */
+    double maxLevel = 0.0;
     for (site = range->val; site != NULL; site = site->next)
 	{
-	levels[site->source->sourceIx] = site->site->dataValue;
+	double level = site->site->dataValue;
+	if (level > 1000)
+	    level = 1000;
+	if (level > maxLevel)
+	    maxLevel = level;
+	levels[site->source->sourceIx] = level;
 	}
 
     /* Output. */
     fprintf(f, "%s\t%d\t%d\t", chrom, range->start, range->end);
     fprintf(f, "%s\t", factor->factor);
-    fprintf(f, "0\t");
+    fprintf(f, "%d\t", round(maxLevel));	/* score */
     fprintf(f, "+\t");  /* strand.... */
     fprintf(f, "%d\t%d\t", range->start, range->end);
     fprintf(f, "0\t");  /* itemRgb */
     fprintf(f, "1\t");  /* block count */