src/hg/makeDb/schema/all.joiner 1.796
1.796 2010/05/10 18:43:35 hartera
Added ecores and phastCons tables to list of tables to be ignored. Added new rules for the consIndels track and the bacCloneAlias tables from danRer.
Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.795
retrieving revision 1.796
diff -b -B -U 4 -r1.795 -r1.796
--- src/hg/makeDb/schema/all.joiner 10 May 2010 17:16:44 -0000 1.795
+++ src/hg/makeDb/schema/all.joiner 10 May 2010 18:43:35 -0000 1.796
@@ -1108,8 +1108,13 @@
$danRer.bacCloneXRef.name dupeOk
$danRer.bacEndPairs.name
$danRer.bacEndSingles.name
+identifier danRerBacSangerName
+"Sanger's identifiers for BAC Clones"
+ $danRer.bacCloneXRef.sangerName dupeOk
+ $danRer.bacCloneAlias.sangerName minCheck=0.97 dupeOk
+
identifier bacAccession typeOf=genbankAccession external=genbank
"Genbank accession of a sequenced BAC (~150kb of genomic sequence)."
identifier humanBacAccession typeOf=bacAccession
@@ -2635,8 +2640,12 @@
"lsSnpPdb table snpId field"
hg18.snp129.name dupeOk
hg18.lsSnpPdb.snpId
+identifier consIndelsId
+"consIndels tables name field"
+ hg17,hg18.consIndelsHgMmCanFam.name
+ hg17,hg18.consIndelsHgMmCanFamConf
# Dependencies not already captured in identifiers
dependency $hg.gladHumESDistance $hg.knownToGnfAtlas2 hgFixed.gladHumESRatio
@@ -3106,8 +3115,11 @@
tablesIgnored $danRer
wz_ests
+tablesIgnored danRer4
+ phastConsElements
+
tablesIgnored $canFam
genomicSuperDups
tablesIgnored $anoGam
@@ -3267,8 +3279,9 @@
tablesIgnored $rn
all_sts_primer
bactigPos
+ ecores%
recombRateRat
syntenyMouse
syntenyHuman
@@ -3287,8 +3300,12 @@
ecoresHg17
cytokines
hoxGenes
+tablesIgnored fr1
+ ecoresHg16
+ ecoresRn3
+
tablesIgnored $felCat
microsat
tablesIgnored hg16
@@ -3302,8 +3319,11 @@
tablesIgnored canFam2
uncertified
+tablesIgnored galGal2
+ ecoresTetraodon
+
tablesIgnored oryLat2
microsat
tablesIgnored susScr2