src/hg/makeDb/schema/all.joiner 1.796

1.796 2010/05/10 18:43:35 hartera
Added ecores and phastCons tables to list of tables to be ignored. Added new rules for the consIndels track and the bacCloneAlias tables from danRer.
Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.795
retrieving revision 1.796
diff -b -B -U 4 -r1.795 -r1.796
--- src/hg/makeDb/schema/all.joiner	10 May 2010 17:16:44 -0000	1.795
+++ src/hg/makeDb/schema/all.joiner	10 May 2010 18:43:35 -0000	1.796
@@ -1108,8 +1108,13 @@
     $danRer.bacCloneXRef.name dupeOk
     $danRer.bacEndPairs.name
     $danRer.bacEndSingles.name
 
+identifier danRerBacSangerName
+"Sanger's identifiers for BAC Clones"
+    $danRer.bacCloneXRef.sangerName dupeOk
+    $danRer.bacCloneAlias.sangerName minCheck=0.97 dupeOk
+
 identifier bacAccession typeOf=genbankAccession external=genbank
 "Genbank accession of a sequenced BAC (~150kb of genomic sequence)."
 
 identifier humanBacAccession typeOf=bacAccession
@@ -2635,8 +2640,12 @@
 "lsSnpPdb table snpId field"
     hg18.snp129.name dupeOk
     hg18.lsSnpPdb.snpId
 
+identifier consIndelsId
+"consIndels tables name field"
+    hg17,hg18.consIndelsHgMmCanFam.name
+    hg17,hg18.consIndelsHgMmCanFamConf
 
 # Dependencies not already captured in identifiers
 
 dependency $hg.gladHumESDistance $hg.knownToGnfAtlas2 hgFixed.gladHumESRatio
@@ -3106,8 +3115,11 @@
 
 tablesIgnored $danRer
     wz_ests
 
+tablesIgnored danRer4
+    phastConsElements
+
 tablesIgnored $canFam
     genomicSuperDups
 
 tablesIgnored $anoGam
@@ -3267,8 +3279,9 @@
 
 tablesIgnored $rn
     all_sts_primer
     bactigPos
+    ecores%
     recombRateRat
     syntenyMouse
     syntenyHuman
 
@@ -3287,8 +3300,12 @@
     ecoresHg17
     cytokines
     hoxGenes
 
+tablesIgnored fr1
+    ecoresHg16
+    ecoresRn3
+
 tablesIgnored $felCat
     microsat
 
 tablesIgnored hg16
@@ -3302,8 +3319,11 @@
 
 tablesIgnored canFam2
     uncertified
 
+tablesIgnored galGal2
+    ecoresTetraodon
+
 tablesIgnored oryLat2
     microsat
 
 tablesIgnored susScr2