src/hg/makeDb/schema/all.joiner 1.799

1.799 2010/05/10 22:15:40 hartera
Fixed probelems with consIndels and danRerBacSangerName rules. For ecores and danRer3 phastConsElements, moved these into the highest level of the hierarchy for the genome in tbalesIgored.

Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.798
retrieving revision 1.799
diff -b -B -U 4 -r1.798 -r1.799
--- src/hg/makeDb/schema/all.joiner	10 May 2010 21:02:06 -0000	1.798
+++ src/hg/makeDb/schema/all.joiner	10 May 2010 22:15:40 -0000	1.799
@@ -1111,9 +1111,9 @@
 
 identifier danRerBacSangerName
 "Sanger's identifiers for BAC Clones"
     danRer3,danRer4.bacCloneXRef.sangerName dupeOk
-    danRer3,danRer4.bacCloneAlias.sangerName minCheck=0.97 dupeOk
+    danRer3,danRer4.bacCloneAlias.sangerName minCheck=0.97
 
 identifier bacAccession typeOf=genbankAccession external=genbank
 "Genbank accession of a sequenced BAC (~150kb of genomic sequence)."
 
@@ -2643,9 +2643,9 @@
 
 identifier consIndelsId
 "consIndels tables name field"
     hg17,hg18.consIndelsHgMmCanFam.name
-    hg17,hg18.consIndelsHgMmCanFamConf
+    hg17,hg18.consIndelsHgMmCanFamConf.id
 
 # Dependencies not already captured in identifiers
 
 dependency $hg.gladHumESDistance $hg.knownToGnfAtlas2 hgFixed.gladHumESRatio
@@ -3109,16 +3109,15 @@
     flyreg
     flyreg2
 
 tablesIgnored $galGal
+    ecoresTetraodon
     supercontig
     caCondor454
 
 tablesIgnored $danRer
-    wz_ests
-
-tablesIgnored danRer4
     phastConsElements
+    wz_ests
 
 tablesIgnored $canFam
     genomicSuperDups
 
@@ -3208,8 +3207,9 @@
     delHinds
     delHinds2
     delMccarroll
     dgv
+    ecoresTetNig1
     encode%
     eponine
     exaptedRepeats
     fox2ClipClusters
@@ -3301,9 +3301,9 @@
     ecoresHg17
     cytokines
     hoxGenes
 
-tablesIgnored fr1
+tablesIgnored $fr
     ecoresHg16
     ecoresRn3
 
 tablesIgnored $felCat
@@ -3314,17 +3314,11 @@
     rat_hmrg
     mouse_hmrg
     syntenyMm4
 
-tablesIgnored hg17
-    ecoresTetNig1
-
 tablesIgnored canFam2
     uncertified
 
-tablesIgnored galGal2
-    ecoresTetraodon
-
 tablesIgnored oryLat2
     microsat
 
 tablesIgnored susScr2