src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.93
1.93 2010/05/07 05:35:51 kent
Changing subTrack to parent.
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.92
retrieving revision 1.93
diff -b -B -U 1000000 -r1.92 -r1.93
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 6 May 2010 16:05:54 -0000 1.92
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 7 May 2010 05:35:51 -0000 1.93
@@ -1,4001 +1,4001 @@
# "$Id$";
track chainNetAplCal1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 655.3
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb aplCal1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetAplCal1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetAplCal1
+ parent chainNetAplCal1
spectrum on
track chainAplCal1
- subTrack chainNetAplCal1Viewchain
+ parent chainNetAplCal1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain aplCal1
html chainNet
track chainNetAplCal1Viewnet
shortLabel Net
view net
visibility dense
- subTrack chainNetAplCal1
+ parent chainNetAplCal1
track netAplCal1
- subTrack chainNetAplCal1Viewnet
+ parent chainNetAplCal1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign aplCal1 chainAplCal1
html chainNet
track chainNetFr2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetFr2
+ parent chainNetFr2
spectrum on
track chainFr2
- subTrack chainNetFr2Viewchain
+ parent chainNetFr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain fr2
html chainNet
track chainNetFr2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetFr2
+ parent chainNetFr2
track netFr2
- subTrack chainNetFr2Viewnet
+ parent chainNetFr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign fr2 chainFr2
html chainNet
track chainNetFr1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetFr1
+ parent chainNetFr1
spectrum on
track chainFr1
- subTrack chainNetFr1Viewchain
+ parent chainNetFr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain fr1
html chainNet
track chainNetFr1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetFr1
+ parent chainNetFr1
track netFr1
- subTrack chainNetFr1Viewnet
+ parent chainNetFr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign fr1 chainFr1
html chainNet
track chainNetTetNig2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetTetNig2
+ parent chainNetTetNig2
spectrum on
track chainTetNig2
- subTrack chainNetTetNig2Viewchain
+ parent chainNetTetNig2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain tetNig2
html chainNet
track chainNetTetNig2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetTetNig2
+ parent chainNetTetNig2
track netTetNig2
- subTrack chainNetTetNig2Viewnet
+ parent chainNetTetNig2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign tetNig2 chainTetNig2
html chainNet
track chainNetTetNig1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetTetNig1
+ parent chainNetTetNig1
spectrum on
track chainTetNig1
- subTrack chainNetTetNig1Viewchain
+ parent chainNetTetNig1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain tetNig1
html chainNet
track chainNetTetNig1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetTetNig1
+ parent chainNetTetNig1
track netTetNig1
- subTrack chainNetTetNig1Viewnet
+ parent chainNetTetNig1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign tetNig1 chainTetNig1
html chainNet
track chainNetDanRer6
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer6
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer6Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDanRer6
+ parent chainNetDanRer6
spectrum on
track chainDanRer6
- subTrack chainNetDanRer6Viewchain
+ parent chainNetDanRer6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer6
html chainNet
track chainNetDanRer6Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDanRer6
+ parent chainNetDanRer6
track netDanRer6
- subTrack chainNetDanRer6Viewnet
+ parent chainNetDanRer6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer6 chainDanRer6
html chainNet
track chainNetDanRer5
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer5
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer5Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDanRer5
+ parent chainNetDanRer5
spectrum on
track chainDanRer5
- subTrack chainNetDanRer5Viewchain
+ parent chainNetDanRer5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer5
html chainNet
track chainNetDanRer5Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDanRer5
+ parent chainNetDanRer5
track netDanRer5
- subTrack chainNetDanRer5Viewnet
+ parent chainNetDanRer5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer5 chainDanRer5
html chainNet
track chainNetDanRer4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer4
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer4Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDanRer4
+ parent chainNetDanRer4
spectrum on
track chainDanRer4
- subTrack chainNetDanRer4Viewchain
+ parent chainNetDanRer4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer4
html chainNet
track chainNetDanRer4Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDanRer4
+ parent chainNetDanRer4
track netDanRer4
- subTrack chainNetDanRer4Viewnet
+ parent chainNetDanRer4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer4 chainDanRer4
html chainNet
track chainNetDanRer3
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer3
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer3Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDanRer3
+ parent chainNetDanRer3
spectrum on
track chainDanRer3
- subTrack chainNetDanRer3Viewchain
+ parent chainNetDanRer3Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer3
html chainNet
track chainNetDanRer3Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDanRer3
+ parent chainNetDanRer3
track netDanRer3
- subTrack chainNetDanRer3Viewnet
+ parent chainNetDanRer3Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer3 chainDanRer3
html chainNet
track chainNetDanRer2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDanRer2
+ parent chainNetDanRer2
spectrum on
track chainDanRer2
- subTrack chainNetDanRer2Viewchain
+ parent chainNetDanRer2Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer2
html chainNet
track chainNetDanRer2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDanRer2
+ parent chainNetDanRer2
track netDanRer2
- subTrack chainNetDanRer2Viewnet
+ parent chainNetDanRer2Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer2 chainDanRer2
html chainNet
track chainNetDanRer1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDanRer1
+ parent chainNetDanRer1
spectrum on
track chainDanRer1
- subTrack chainNetDanRer1Viewchain
+ parent chainNetDanRer1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer1
html chainNet
track chainNetDanRer1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDanRer1
+ parent chainNetDanRer1
track netDanRer1
- subTrack chainNetDanRer1Viewnet
+ parent chainNetDanRer1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer1 chainDanRer1
html chainNet
track chainNetXenTro2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetXenTro2
+ parent chainNetXenTro2
spectrum on
track chainXenTro2
- subTrack chainNetXenTro2Viewchain
+ parent chainNetXenTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain xenTro2
html chainNet
track chainNetXenTro2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetXenTro2
+ parent chainNetXenTro2
track netXenTro2
- subTrack chainNetXenTro2Viewnet
+ parent chainNetXenTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign xenTro2 chainXenTro2
html chainNet
track chainNetXenTro1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetXenTro1
+ parent chainNetXenTro1
spectrum on
track chainXenTro1
- subTrack chainNetXenTro1Viewchain
+ parent chainNetXenTro1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain xenTro1
html chainNet
track chainNetXenTro1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetXenTro1
+ parent chainNetXenTro1
track netXenTro1
- subTrack chainNetXenTro1Viewnet
+ parent chainNetXenTro1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign xenTro1 chainXenTro1
html chainNet
track chainNetOryLat2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetOryLat2
+ parent chainNetOryLat2
spectrum on
track chainOryLat2
- subTrack chainNetOryLat2Viewchain
+ parent chainNetOryLat2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryLat2
otherDb oryLat2
html chainNet
track chainNetOryLat2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetOryLat2
+ parent chainNetOryLat2
track netOryLat2
- subTrack chainNetOryLat2Viewnet
+ parent chainNetOryLat2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryLat2 chainOryLat2
otherDb oryLat2
html chainNet
# release alpha since oryLat1 is obsolete
track chainNetOryLat1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetOryLat1
+ parent chainNetOryLat1
spectrum on
track chainOryLat1
release alpha
- subTrack chainNetOryLat1Viewchain
+ parent chainNetOryLat1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryLat1
otherDb oryLat1
html chainNet
track chainNetOryLat1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetOryLat1
+ parent chainNetOryLat1
track netOryLat1
release alpha
- subTrack chainNetOryLat1Viewnet
+ parent chainNetOryLat1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryLat1 chainOryLat1
otherDb oryLat1
html chainNet
track chainNetGasAcu1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb gasAcu1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGasAcu1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetGasAcu1
+ parent chainNetGasAcu1
spectrum on
track chainGasAcu1
- subTrack chainNetGasAcu1Viewchain
+ parent chainNetGasAcu1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain gasAcu1
html chainNet
track chainNetGasAcu1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetGasAcu1
+ parent chainNetGasAcu1
track netGasAcu1
- subTrack chainNetGasAcu1Viewnet
+ parent chainNetGasAcu1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign gasAcu1 chainGasAcu1
html chainNet
track chainNetGalGal3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb galGal3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGalGal3Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetGalGal3
+ parent chainNetGalGal3
spectrum on
track chainGalGal3
- subTrack chainNetGalGal3Viewchain
+ parent chainNetGalGal3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain galGal3
html chainNet
track chainNetGalGal3Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetGalGal3
+ parent chainNetGalGal3
track netGalGal3
- subTrack chainNetGalGal3Viewnet
+ parent chainNetGalGal3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign galGal3 chainGalGal3
html chainNet
track chainNetGalGal2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb galGal2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetGalGal2Viewchain
shortLabel Chain
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track chainGalGal2
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html chainNet
track chainNetGalGal2Viewnet
shortLabel Net
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track netGalGal2
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html chainNet
track chainNetTaeGut1
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track chainNetTaeGut1Viewchain
shortLabel Chain
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shortLabel Net
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track chainNetOrnAna1Viewchain
shortLabel Chain
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html chainNet
track chainNetOrnAna1Viewnet
shortLabel Net
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track chainNetAnoCar1Viewchain
shortLabel Chain
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html chainNet
track chainNetAnoCar1Viewnet
shortLabel Net
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html chainNet
track chainNetPetMar1
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html chainNet
track chainNetPetMar1Viewchain
shortLabel Chain
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track chainPetMar1
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html chainNet
track chainNetPetMar1Viewnet
shortLabel Net
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track netPetMar1
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html chainNet
track chainNetBraFlo1
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html chainNet
track chainNetBraFlo1Viewchain
shortLabel Chain
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track chainBraFlo1
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html chainNet
track chainNetBraFlo1Viewnet
shortLabel Net
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html chainNet
track chainNetStrPur2
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shortLabel $o_Organism Chain/Net
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html chainNet
track chainNetStrPur2Viewchain
shortLabel Chain
view chain
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track chainStrPur2
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html chainNet
track chainNetStrPur2Viewnet
shortLabel Net
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track netStrPur2
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html chainNet
track chainNetMacEug1
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longLabel $o_Organism ($o_date), Chain and Net Alignments
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spectrum on
html chainNet
track chainMacEug1
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shortLabel $o_Organism Chain
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html chainNet
track netMacEug1
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html chainNet
track chainNetLoxAfr3
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chainMinScore 3000
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spectrum on
html chainNet
track chainNetLoxAfr3Viewchain
shortLabel Chain
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track chainLoxAfr3
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html chainNet
track chainNetLoxAfr3Viewnet
shortLabel Net
view net
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track netLoxAfr3
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html chainNet
track chainNetLoxAfr2
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spectrum on
html chainNet
track chainNetLoxAfr2Viewchain
shortLabel Chain
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track chainLoxAfr2
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shortLabel $o_Organism Chain
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html chainNet
track chainNetLoxAfr2Viewnet
shortLabel Net
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track netLoxAfr2
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html chainNet
track chainNetLoxAfr1
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longLabel $o_Organism ($o_date), Chain and Net Alignments
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spectrum on
html chainNet
track chainNetLoxAfr1Viewchain
shortLabel Chain
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- subTrack chainNetLoxAfr1
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track chainLoxAfr1
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html chainNet
track chainNetLoxAfr1Viewnet
shortLabel Net
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track netLoxAfr1
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html chainNet
track chainNetMonDom1
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chainMinScore 5000
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spectrum on
html chainNet
track chainNetMonDom1Viewchain
shortLabel Chain
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track chainMonDom1
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html chainNet
track chainNetMonDom1Viewnet
shortLabel Net
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track netMonDom1
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shortLabel $o_Organism Net
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html chainNet
track chainNetMonDom4
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shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
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dragAndDrop subTracks
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chainMinScore 3000
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spectrum on
html chainNet
track chainNetMonDom4Viewchain
shortLabel Chain
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visibility pack
- subTrack chainNetMonDom4
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spectrum on
track chainMonDom4
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shortLabel $o_Organism Chain
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html chainNet
track chainNetMonDom4Viewnet
shortLabel Net
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track netMonDom4
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html chainNet
track chainNetMonDom5
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chainMinScore 3000
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spectrum on
html chainNet
track chainNetMonDom5Viewchain
shortLabel Chain
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track chainMonDom5
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shortLabel $o_Organism Chain
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html chainNet
track chainNetMonDom5Viewnet
shortLabel Net
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track netMonDom5
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shortLabel $o_Organism Net
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html chainNet
track chainNetEriEur1
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otherDb eriEur1
chainMinScore 3000
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spectrum on
html chainNet
track chainNetEriEur1Viewchain
shortLabel Chain
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- subTrack chainNetEriEur1
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track chainEriEur1
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shortLabel $o_Organism Chain
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html chainNet
track chainNetEriEur1Viewnet
shortLabel Net
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track netEriEur1
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html chainNet
track chainNetSorAra1
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spectrum on
html chainNet
track chainNetSorAra1Viewchain
shortLabel Chain
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track chainSorAra1
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html chainNet
track chainNetSorAra1Viewnet
shortLabel Net
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track netSorAra1
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html chainNet
track chainNetMm9
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html chainNet
track chainNetMm9Viewchain
shortLabel Chain
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track chainMm9
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html chainNet
track chainNetMm9Viewnet
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track netMm9
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shortLabel $o_Organism Net
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track chainNetMm8
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html chainNet
track chainNetMm8Viewchain
shortLabel Chain
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track chainMm8
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html chainNet
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track netMm8
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spectrum on
html chainNet
track chainNetMm7Viewchain
shortLabel Chain
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spectrum on
track chainMm7
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shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain mm7
html chainNet
track chainNetMm7Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetMm7
+ parent chainNetMm7
track netMm7
- subTrack chainNetMm7Viewnet
+ parent chainNetMm7Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign mm7 chainMm7
html chainNet
track chainNetMm6
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm6
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetMm6Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetMm6
+ parent chainNetMm6
spectrum on
track chainMm6
- subTrack chainNetMm6Viewchain
+ parent chainNetMm6Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain mm6
html chainNet
track chainNetMm6Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetMm6
+ parent chainNetMm6
track netMm6
- subTrack chainNetMm6Viewnet
+ parent chainNetMm6Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign mm6 chainMm6
html chainNet
track chainNetMm5
release alpha
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
visibilityViewDefaults chain=pack net=dense
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
settingsByView chain:spectrum=on
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb mm5
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainMm5
release alpha
- subTrack chainNetMm5
+ parent chainNetMm5
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain mm5
html chainNet
track netMm5
release alpha
- subTrack chainNetMm5
+ parent chainNetMm5
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign mm5 chainMm5
html chainNet
track chainNetRn4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetRn4Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetRn4
+ parent chainNetRn4
spectrum on
track chainRn4
- subTrack chainNetRn4Viewchain
+ parent chainNetRn4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain rn4
html chainNet
track chainNetRn4Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetRn4
+ parent chainNetRn4
track netRn4
- subTrack chainNetRn4Viewnet
+ parent chainNetRn4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign rn4 chainRn4
html chainNet
track chainNetRn3
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rn3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetRn3Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetRn3
+ parent chainNetRn3
spectrum on
track chainRn3
- subTrack chainNetRn3Viewchain
+ parent chainNetRn3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain rn3
html chainNet
track chainNetRn3Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetRn3
+ parent chainNetRn3
track netRn3
- subTrack chainNetRn3Viewnet
+ parent chainNetRn3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign rn3 chainRn3
html chainNet
track chainNetCavPor3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor3Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetCavPor3
+ parent chainNetCavPor3
spectrum on
track chainCavPor3
- subTrack chainNetCavPor3Viewchain
+ parent chainNetCavPor3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain cavPor3
html chainNet
track chainNetCavPor3Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetCavPor3
+ parent chainNetCavPor3
track netCavPor3
- subTrack chainNetCavPor3Viewnet
+ parent chainNetCavPor3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign cavPor3 chainCavPor3
html chainNet
# release alpha until cavPor2 individual chain/net tracks phased out
track chainNetCavPor2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetCavPor2
+ parent chainNetCavPor2
spectrum on
track chainCavPor2
release alpha
- subTrack chainNetCavPor2Viewchain
+ parent chainNetCavPor2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain cavPor2
html chainNet
track chainNetCavPor2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetCavPor2
+ parent chainNetCavPor2
track netCavPor2
release alpha
- subTrack chainNetCavPor2Viewnet
+ parent chainNetCavPor2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign cavPor2 chainCavPor2
html chainNet
track chainNetOryCun2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetOryCun2
+ parent chainNetOryCun2
spectrum on
track chainOryCun2
- subTrack chainNetOryCun2Viewchain
+ parent chainNetOryCun2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryCun2
html chainNet
track chainNetOryCun2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetOryCun2
+ parent chainNetOryCun2
track netOryCun2
- subTrack chainNetOryCun2Viewnet
+ parent chainNetOryCun2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryCun2 chainOryCun2
html chainNet
track chainNetOryCun1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetOryCun1
+ parent chainNetOryCun1
spectrum on
track chainOryCun1
- subTrack chainNetOryCun1Viewchain
+ parent chainNetOryCun1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryCun1
html chainNet
track chainNetOryCun1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetOryCun1
+ parent chainNetOryCun1
track netOryCun1
- subTrack chainNetOryCun1Viewnet
+ parent chainNetOryCun1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryCun1 chainOryCun1
html chainNet
track chainNetEquCab2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetEquCab2
+ parent chainNetEquCab2
spectrum on
track chainEquCab2
- subTrack chainNetEquCab2Viewchain
+ parent chainNetEquCab2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain equCab2
html chainNet
track chainNetEquCab2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetEquCab2
+ parent chainNetEquCab2
track netEquCab2
- subTrack chainNetEquCab2Viewnet
+ parent chainNetEquCab2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign equCab2 chainEquCab2
html chainNet
track chainNetEquCab1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetEquCab1
+ parent chainNetEquCab1
spectrum on
track chainEquCab1
- subTrack chainNetEquCab1Viewchain
+ parent chainNetEquCab1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain equCab1
html chainNet
track chainNetEquCab1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetEquCab1
+ parent chainNetEquCab1
track netEquCab1
- subTrack chainNetEquCab1Viewnet
+ parent chainNetEquCab1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign equCab1 chainEquCab1
html chainNet
track chainNetEchTel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb echTel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEchTel1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetEchTel1
+ parent chainNetEchTel1
spectrum on
track chainEchTel1
- subTrack chainNetEchTel1Viewchain
+ parent chainNetEchTel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain echTel1
html chainNet
track chainNetEchTel1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetEchTel1
+ parent chainNetEchTel1
track netEchTel1
- subTrack chainNetEchTel1Viewnet
+ parent chainNetEchTel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign echTel1 chainEchTel1
html chainNet
track chainNetDasNov2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDasNov2
+ parent chainNetDasNov2
spectrum on
track chainDasNov2
- subTrack chainNetDasNov2Viewchain
+ parent chainNetDasNov2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain dasNov2
html chainNet
track chainNetDasNov2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDasNov2
+ parent chainNetDasNov2
track netDasNov2
- subTrack chainNetDasNov2Viewnet
+ parent chainNetDasNov2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign dasNov2 chainDasNov2
html chainNet
track chainNetDasNov1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetDasNov1
+ parent chainNetDasNov1
spectrum on
track chainDasNov1
- subTrack chainNetDasNov1Viewchain
+ parent chainNetDasNov1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain dasNov1
html chainNet
track chainNetDasNov1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetDasNov1
+ parent chainNetDasNov1
track netDasNov1
- subTrack chainNetDasNov1Viewnet
+ parent chainNetDasNov1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign dasNov1 chainDasNov1
html chainNet
track chainNetSusScr2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 475.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb susScr2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSusScr2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetSusScr2
+ parent chainNetSusScr2
spectrum on
track chainSusScr2
- subTrack chainNetSusScr2Viewchain
+ parent chainNetSusScr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain susScr2
html chainNet
track chainNetSusScr2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetSusScr2
+ parent chainNetSusScr2
track netSusScr2
- subTrack chainNetSusScr2Viewnet
+ parent chainNetSusScr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign susScr2 chainSusScr2
html chainNet
track chainNetSusScr1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 475.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb susScr1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSusScr1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetSusScr1
+ parent chainNetSusScr1
spectrum on
track chainSusScr1
- subTrack chainNetSusScr1Viewchain
+ parent chainNetSusScr1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain susScr1
html chainNet
track chainNetSusScr1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetSusScr1
+ parent chainNetSusScr1
track netSusScr1
- subTrack chainNetSusScr1Viewnet
+ parent chainNetSusScr1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign susScr1 chainSusScr1
html chainNet
track chainNetOviAri1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 230
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oviAri1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOviAri1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetOviAri1
+ parent chainNetOviAri1
spectrum on
track chainOviAri1
- subTrack chainNetOviAri1Viewchain
+ parent chainNetOviAri1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oviAri1
html chainNet
track chainNetOviAri1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetOviAri1
+ parent chainNetOviAri1
track netOviAri1
- subTrack chainNetOviAri1Viewnet
+ parent chainNetOviAri1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oviAri1 chainOviAri1
html chainNet
track chainNetBosTau4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau4Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetBosTau4
+ parent chainNetBosTau4
spectrum on
track chainBosTau4
- subTrack chainNetBosTau4Viewchain
+ parent chainNetBosTau4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain bosTau4
html chainNet
track chainNetBosTau4Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetBosTau4
+ parent chainNetBosTau4
track netBosTau4
- subTrack chainNetBosTau4Viewnet
+ parent chainNetBosTau4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign bosTau4 chainBosTau4
html chainNet
track chainNetBosTau3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau3Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetBosTau3
+ parent chainNetBosTau3
spectrum on
track chainBosTau3
- subTrack chainNetBosTau3Viewchain
+ parent chainNetBosTau3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain bosTau3
html chainNet
track chainNetBosTau3Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetBosTau3
+ parent chainNetBosTau3
track netBosTau3
- subTrack chainNetBosTau3Viewnet
+ parent chainNetBosTau3Viewnet
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track chainNetBosTau1Viewchain
shortLabel Chain
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track chainNetAilMel1Viewchain
shortLabel Chain
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track chainNetAilMel1Viewnet
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track chainNetCanFam2Viewchain
shortLabel Chain
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track chainNetCanFam2Viewnet
shortLabel Net
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html chainNet
track chainNetFelCatV17e
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track chainNetFelCatV17eViewchain
shortLabel Chain
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track chainFelCatV17e
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track chainNetFelCatV17eViewnet
shortLabel Net
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html chainNet
track chainNetFelCat3
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html chainNet
track chainNetFelCat3Viewchain
shortLabel Chain
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track chainFelCat3
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html chainNet
track chainNetFelCat3Viewnet
shortLabel Net
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track netFelCat3
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track chainNetMicMur1
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html chainNet
track chainNetMicMur1Viewchain
shortLabel Chain
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track chainNetMicMur1Viewnet
shortLabel Net
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html chainNet
track chainNetTarSyr1
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html chainNet
track chainNetTarSyr1Viewchain
shortLabel Chain
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html chainNet
track chainNetTarSyr1Viewnet
shortLabel Net
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html chainNet
track chainNetVenter
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longLabel J. Craig Venter Chain and Net Alignments
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track chainVenter1
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track chainNetVenterViewnet
shortLabel Nets
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track netVenter1
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group compGeno
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html chainNet
track chainNetHg18Viewchain
shortLabel Chain
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track chainHg18
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longLabel $o_Organism ($o_date) Chained Alignments
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html chainNet
track chainNetHg18Viewnet
shortLabel Net
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track netHg18
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shortLabel $o_Organism Net
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html chainNet
track chainNetHg19
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dragAndDrop subTracks
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group compGeno
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html chainNet
track chainNetHg19Viewchain
shortLabel Chain
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track chainHg19
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longLabel $o_Organism ($o_date) Chained Alignments
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html chainNet
track chainNetHg19Viewnet
shortLabel Net
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track netHg19
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shortLabel $o_Organism Net
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html chainNet
track chainNetHg17
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dragAndDrop subTracks
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group compGeno
noInherit on
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altColor 100,50,0
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chainMinScore 1000
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html chainNet
track chainNetHg17Viewchain
shortLabel Chain
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track chainHg17
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shortLabel $o_Organism Chain
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html chainNet
track chainNetHg17Viewnet
shortLabel Net
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track netHg17
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html chainNet
track chainNetPanTro2
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dragAndDrop subTracks
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group compGeno
noInherit on
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html chainNet
track chainNetPanTro2Viewchain
shortLabel Chain
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- subTrack chainNetPanTro2
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spectrum on
track chainPanTro2
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html chainNet
track chainNetPanTro2Viewnet
shortLabel Net
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track netPanTro2
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shortLabel $o_Organism Net
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html chainNet
track chainNetPanTro1
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html chainNet
track chainNetPanTro1Viewchain
shortLabel Chain
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track chainPanTro1
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html chainNet
track chainNetPanTro1Viewnet
shortLabel Net
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track netPanTro1
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html chainNet
track chainNetGorGor2
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dragAndDrop subTracks
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group compGeno
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html chainNet
track chainNetGorGor2Viewchain
shortLabel Chain
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track chainGorGor2
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html chainNet
track chainNetGorGor2Viewnet
shortLabel Net
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track netGorGor2
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html chainNet
track chainNetGorGor1
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dragAndDrop subTracks
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group compGeno
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altColor 100,50,0
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html chainNet
track chainNetGorGor1Viewchain
shortLabel Chain
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html chainNet
track chainNetGorGor1Viewnet
shortLabel Net
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track netGorGor1
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track chainNetPonAbe2
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dragAndDrop subTracks
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html chainNet
track chainNetPonAbe2Viewchain
shortLabel Chain
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html chainNet
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shortLabel Net
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track netPonAbe2
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html chainNet
track chainNetTupBel1
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dragAndDrop subTracks
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group compGeno
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html chainNet
track chainNetTupBel1Viewchain
shortLabel Chain
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spectrum on
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html chainNet
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track netTupBel1
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html chainNet
track chainNetOtoGar1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb otoGar1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOtoGar1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetOtoGar1
+ parent chainNetOtoGar1
spectrum on
track chainOtoGar1
- subTrack chainNetOtoGar1Viewchain
+ parent chainNetOtoGar1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain otoGar1
html chainNet
track chainNetOtoGar1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetOtoGar1
+ parent chainNetOtoGar1
track netOtoGar1
- subTrack chainNetOtoGar1Viewnet
+ parent chainNetOtoGar1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment net
type netAlign otoGar1 chainOtoGar1
html chainNet
track chainNetCalJac3
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 260.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb calJac3
chainMinScore 5000
chainLinearGap medium
html chainNet
track chainNetCalJac3Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetCalJac3
+ parent chainNetCalJac3
spectrum on
track chainCalJac3
- subTrack chainNetCalJac3Viewchain
+ parent chainNetCalJac3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain calJac3
html chainNet
track chainNetCalJac3Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetCalJac3
+ parent chainNetCalJac3
track netCalJac3
- subTrack chainNetCalJac3Viewnet
+ parent chainNetCalJac3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment net
type netAlign calJac3 chainCalJac3
html chainNet
track chainNetCalJac1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb calJac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetCalJac1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetCalJac1
+ parent chainNetCalJac1
spectrum on
track chainCalJac1
- subTrack chainNetCalJac1Viewchain
+ parent chainNetCalJac1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain calJac1
html chainNet
track chainNetCalJac1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetCalJac1
+ parent chainNetCalJac1
track netCalJac1
- subTrack chainNetCalJac1Viewnet
+ parent chainNetCalJac1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment net
type netAlign calJac1 chainCalJac1
html chainNet
track chainNetPapHam1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
matrixHeader A, C, G, T
otherDb papHam1
chainMinScore 5000
chainLinearGap medium
html chainNet
track chainNetPapHam1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetPapHam1
+ parent chainNetPapHam1
spectrum on
track chainPapHam1
- subTrack chainNetPapHam1Viewchain
+ parent chainNetPapHam1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain papHam1
html chainNet
track chainNetPapHam1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetPapHam1
+ parent chainNetPapHam1
track netPapHam1
- subTrack chainNetPapHam1Viewnet
+ parent chainNetPapHam1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment net
type netAlign papHam1 chainPapHam1
html chainNet
track chainNetRheMac2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetRheMac2Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetRheMac2
+ parent chainNetRheMac2
spectrum on
track chainRheMac2
- subTrack chainNetRheMac2Viewchain
+ parent chainNetRheMac2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain rheMac2
html chainNet
track chainNetRheMac2Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetRheMac2
+ parent chainNetRheMac2
track netRheMac2
- subTrack chainNetRheMac2Viewnet
+ parent chainNetRheMac2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment net
type netAlign rheMac2 chainRheMac2
html chainNet
track chainNetRheMac1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 498
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb rheMac1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetRheMac1Viewchain
shortLabel Chain
view chain
visibility pack
- subTrack chainNetRheMac1
+ parent chainNetRheMac1
spectrum on
track chainRheMac1
- subTrack chainNetRheMac1Viewchain
+ parent chainNetRheMac1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain rheMac1
html chainNet
track chainNetRheMac1Viewnet
shortLabel Net
view net
visibility full
- subTrack chainNetRheMac1
+ parent chainNetRheMac1
track netRheMac1
- subTrack chainNetRheMac1Viewnet
+ parent chainNetRheMac1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment net
type netAlign rheMac1 chainRheMac1
html chainNet
track chainNetPoodle
compositeTrack on
shortLabel Poodle Chain/Net
longLabel Poodle Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 500
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
track chainNetPoodleViewchain
shortLabel Chains
view chain
visibility pack
- subTrack chainNetPoodle
+ parent chainNetPoodle
spectrum on
track chainCanFamPoodle1
- subTrack chainNetPoodleViewchain off
+ parent chainNetPoodleViewchain off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
color 0,0,0
altColor 100,50,0
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
type chain canFamPoodle1
otherDb canFamPoodle1
track chainNetPoodleViewnet
shortLabel Nets
view net
visibility full
- subTrack chainNetPoodle
+ parent chainNetPoodle
track netCanFamPoodle1
- subTrack chainNetPoodleViewnet off
+ parent chainNetPoodleViewnet off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign canFamPoodle1 chainCanFamPoodle1
otherDb canFamPoodle1