hartera: changes by file

branch to review (2010-05-04 to 2010-05-11) v231

• src/hg/makeDb/doc/encodeHg18.txt
  • 1.34 lines changed: 10, context: html, text, full: html, text
    Removed documentation about CRG Mapability track as this is from the whole genome ENCODE and this document is for the pilot project.
• src/hg/makeDb/doc/encodeHg19.txt
  • 1.3 lines changed: 14, context: html, text, full: html, text
    Removed file as notes for the whole genome ENCODE are in another directory.
• src/hg/makeDb/doc/encodeDccHg18/mapability.txt
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Updated release notes for CRG subtracks of Mapability track.
• src/hg/makeDb/doc/encodeDccHg19/mapability.txt
  • 1.1 lines changed: 8, context: html, text, full: html, text
    Mapabilty track release notes for first release.
• src/hg/makeDb/schema/all.joiner
  • 1.799 lines changed: 15, context: html, text, full: html, text
    Fixed probelems with consIndels and danRerBacSangerName rules. For ecores and danRer3 phastConsElements, moved these into the highest level of the hierarchy for the genome in tbalesIgored.
  • 1.797 lines changed: 2, context: html, text, full: html, text
    Changed danRerBacSangerName rule to be specific for danRer3 and danRer4.
  • 1.796 lines changed: 20, context: html, text, full: html, text
    Added ecores and phastCons tables to list of tables to be ignored. Added new rules for the consIndels track and the bacCloneAlias tables from danRer.