mary: changes by file

branch to review (2010-05-04 to 2010-05-11) v231

• src/hg/makeDb/genbank/etc/rr.dbs
  • 1.92 lines changed: 1, context: html, text, full: html, text
    turning on genbank updates for susScr2
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • 1.23 lines changed: 1, context: html, text, full: html, text
    changing chainMinScore gap to 3000 for calJac3 as I was told to do by the script
• src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra
  • 1.11 lines changed: 2, context: html, text, full: html, text
    moving chain/Net overrides for rheMac2 down one level for calJac3. interferring with calJac1 when on marmoset level
• src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.chainNet.ra
  • 1.4 lines changed: 4, context: html, text, full: html, text
    moving chain/Net overrides for rheMac2 down one level for calJac3. interferring with calJac1 when on marmoset level
  • 1.3 lines changed: 4, context: html, text, full: html, text
    adding matrix and chainMinScore overrides for ponAbe2 in calJac3
  • 1.2 lines changed: 2, context: html, text, full: html, text
    removing unecessary lines from chainNetPanTro2 override
  • 1.1 lines changed: 5, context: html, text, full: html, text
    adding a .chainNet.ra file to override chainNets for panTro2
• src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra
  • 1.5 lines changed: 2, context: html, text, full: html, text
    adding include line to include new trackDb.chainNet.ra file
• src/hg/makeDb/trackDb/pig/trackDb.chainNet.ra
  • 1.3 lines changed: 8, context: html, text, full: html, text
    adding visibility overrides to make the default position for susScr2. Did affect susSCr1, but figured since it was only on dev this was ok
• src/hg/makeDb/trackDb/pig/trackDb.ra
  • 1.3 lines changed: 6, context: html, text, full: html, text
    adding visibility overrides to make the default position for susScr2. Did affect susSCr1, but figured since it was only on dev this was ok
• src/utils/qa/chain.csh
  • 1.33 lines changed: 1, context: html, text, full: html, text
    adding period