src/utils/qa/gc-stats.pl 1.2

Index: src/utils/qa/gc-stats.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/gc-stats.pl,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/utils/qa/gc-stats.pl	17 Mar 2005 23:58:30 -0000	1.1
+++ src/utils/qa/gc-stats.pl	21 May 2010 23:52:35 -0000	1.2
@@ -1,17 +1,17 @@
 #!/usr/local/bin/perl5
 
 # Program: gc-stats.pl
 # Purpose: parses output of gene-check script into summary statistics
-# Test Protocal: http://hgwdev.cse.ucsc.edu/qa/test-protocols/gene-check.protocol.html
-# Summary results: http://hgwdev.cse.ucsc.edu/qa/test-results/gene-check.results.html
+# Test Protocal: http://genecats.cse.ucsc.edu/qa/test-protocols/gene-check.protocol.html
+# Summary results: http://genecats.cse.ucsc.edu/qa/test-results/gene-check.results.html
 # Author: Jennifer Jackson
 # Int Date: 2005-11-14
 # Rev Date: 2005-11-XX
 
 
 $documentation = "See test protocol documentation
-        http://hgwdev.cse.ucsc.edu/qa/test-protocols/gene-check.protocol.html";
+        http://genecats.cse.ucsc.edu/qa/test-protocols/gene-check.protocol.html";
 
 if ($#ARGV != 2) { die
 "\nUSAGE: $0 <genePreds_table> <gc-details> <gc-summary>
         Parses output of gene-check script into summary statistics
@@ -23,11 +23,11 @@
         <gc-stats>        file name format: pred_table.db.server.YYMMDD.gc-stats
         <gc-report>       file name format: pred_table.db.server.YYMMDD.gc-report
 	\nWhen complete, do the following to save your results ......	
 	1)Save the <gc-report> file in report directory:
-        /usr/local/apache/htdocs/qa/test-results/gc-stats.results 
+        /usr/local/apache/htdocs-genecats/qa/test-results/gc-stats.results 
         2)Add the html contents of <gc-stats> into results file:
-	/usr/local/apache/htdocs/qa/test-results/gc-stats.results.html
+	/usr/local/apache/htdocs-genecats/qa/test-results/gc-stats.results.html
         3)Keep working files until QA complete in work directory, then delete:
         /cluster/store9/qa/gene-check
         $documentation\n\n";}
 
@@ -113,11 +113,11 @@
 open STAT, ">$stat_file";
 open REPORT,  ">$report_file";
 print STAT   "$0 gc-stats file for $in_preds\n\n";
 print STAT   "Paste the html formated results below into file:\n"; 
-print STAT   "/usr/local/apache/htdocs/qa/test-results/gc-stats.results.html\n\n";
+print STAT   "/usr/local/apache/htdocs-genecats/qa/test-results/gc-stats.results.html\n\n";
 print REPORT "$0 gc-report file for $in_preds\n\n";
-print REPORT "Save file at /usr/local/apache/htdocs/qa/test-results/gc-stats.reports\n\n";
+print REPORT "Save file at /usr/local/apache/htdocs-genecats/qa/test-results/gc-stats.reports\n\n";
 
 
 # in preds, count up ids & preds per id
 $preds_id_all  = 0;