src/hg/makeDb/trackDb/syntenyHuman.html 1.3
1.3 2010/05/21 18:52:21 mary
changing instances of [0-9]kb to [0-9] kb. Repeated for bp, Mb, Gb, and nts. For every instance that was changed, I made sure that it was changed to be correctly capitalized (bp, kb, Mb, Gb, nts).
Index: src/hg/makeDb/trackDb/syntenyHuman.html
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RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/syntenyHuman.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 1000000 -r1.2 -r1.3
--- src/hg/makeDb/trackDb/syntenyHuman.html 6 Feb 2004 21:37:51 -0000 1.2
+++ src/hg/makeDb/trackDb/syntenyHuman.html 21 May 2010 18:52:21 -0000 1.3
@@ -1,17 +1,17 @@
<H2>Description</H2>
<P>
This track shows syntenous (corresponding) regions between human and mouse chromosomes.
<H2>Methods</H2>
<P>
We passed a 100k non-overlapping window over the genome and - using the blastz best in mouse
genome alignments - looked for high-scoring regions with at least 40% of the bases aligning
with the same region in mouse. 100k segments were joined together if they agreed in direction and
-were within 500kb of each other in the human genome and within 4mb of each other in the mouse.
+were within 500 kb of each other in the human genome and within 4 Mb of each other in the mouse.
Gaps were joined between syntenic anchors if the bases between two flanking regions agreed with
synteny (direction and mouse location). Finally, we extended the syntenic block to include those
areas.<p>
<H2>Credits</H2>
<P>
Contact <A HREF="mailto:baertsch@cse.ucsc.edu">Robert
Baertsch</A> at UCSC for more information about this track.
Thanks to the Mouse Genome Sequencing Consortium for providing the mouse sequence data.