src/hg/makeDb/trackDb/syntenyRat.html 1.5
1.5 2010/05/21 18:52:21 mary
changing instances of [0-9]kb to [0-9] kb. Repeated for bp, Mb, Gb, and nts. For every instance that was changed, I made sure that it was changed to be correctly capitalized (bp, kb, Mb, Gb, nts).
Index: src/hg/makeDb/trackDb/syntenyRat.html
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RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/syntenyRat.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 1000000 -r1.4 -r1.5
--- src/hg/makeDb/trackDb/syntenyRat.html 23 Aug 2004 19:59:59 -0000 1.4
+++ src/hg/makeDb/trackDb/syntenyRat.html 21 May 2010 18:52:21 -0000 1.5
@@ -1,16 +1,16 @@
<H2>Description</H2>
<P>
This track shows syntenous (corresponding) regions between $organism and rat chromosomes.
<H2>Methods</H2>
<P>
We passed a 100k non-overlapping window over the genome and using the Blastz best in rat
genome alignments - looked for high-scoring regions with at least 40% of the bases aligning
with the same region in rat. 100k segments were joined together if they agreed in direction and
-were within 500kb of each other in the $organism genome and within 4mb of each other in the rat.
+were within 500 kb of each other in the $organism genome and within 4 Mb of each other in the rat.
Gaps were joined between syntenic anchors if the bases between two flanking regions agreed with
synteny (direction and rat location). Finally, we extended the syntenic block to include those
areas.<p>
<H2>Credits</H2>
<P>
Contact <A HREF="mailto:baertsch@cse.ucsc.edu">Robert
Baertsch</A> at UCSC for more information about this track.