src/lib/tests/input/specialCasesTest.gff3 1.2
1.2 2010/05/25 00:14:54 markd
Made C attribute related names more consistent with GFF3 specification.
Fixed bug were bogus quotes were not detected.
Fixed bug with empty attribute values.
Index: src/lib/tests/input/specialCasesTest.gff3
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/lib/tests/input/specialCasesTest.gff3,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/lib/tests/input/specialCasesTest.gff3 22 Apr 2009 16:56:49 -0000 1.1
+++ src/lib/tests/input/specialCasesTest.gff3 25 May 2010 00:14:54 -0000 1.2
@@ -1,9 +1,11 @@
##gff-version 3
##sequence-region 2L 1 23011544
##organism 2L Drosophila melanogaster
# Target attribute
2L blastx_masked_aa_SPTR.dmel match 22229583 22229699 . - . ID=:1577877_blastx_masked_aa_SPTR.dmel;Name=Q9VKH2-AE003783.4-aa_SPTR.dmel-blastx_masked;program=blastx_masked;programversion=1.0;sourcename=aa_SPTR.dmel;Target=Q9VKH2 596 629 +
2L blastx_masked_aa_SPTR.dmel match 22229583 22229699 . - . ID=:1577939_blastx_masked_aa_SPTR.dmel;Name=P39770-AE003783.4-aa_SPTR.dmel-blastx_masked;program=blastx_masked;programversion=1.0;sourcename=aa_SPTR.dmel;Target=P39770 596 629 +
2L blastx_masked_aa_SPTR.dmel match_part 22229583 22229699 48 - . Name=:5411425;Parent=:1577877_blastx_masked_aa_SPTR.dmel;target_type=protein;Target=Q9VKH2 596 629
2L blastx_masked_aa_SPTR.dmel match_part 22229583 22229699 48 - . Name=:5411530;Parent=:1577939_blastx_masked_aa_SPTR.dmel;target_type=protein;Target=P39770 596 629
+# empty attr value
+chr RNA RNA 788298 788656 . + . ID=tmRNA;Name=;Note=regulatory ncRNA