src/utils/qa/full_joinerCheck.csh 1.4

Index: src/utils/qa/full_joinerCheck.csh
===================================================================
RCS file: src/utils/qa/full_joinerCheck.csh
diff -N src/utils/qa/full_joinerCheck.csh
--- src/utils/qa/full_joinerCheck.csh	11 Apr 2009 00:37:03 -0000	1.3
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,42 +0,0 @@
-#!/bin/tcsh
-source `which qaConfig.csh`
-# Script to run joinerCheck for full database with -key options
-# 08-17-04 M. Chalup
-# ---------
-
-# Check number of arguments
-if ($#argv != 1) then
-        echo "Usage: full_joinerCheck.csh <current_db_release>"
-        exit 1
-endif
-
-set current_dir = $cwd
-set db=$argv[1]
-
-# Update all.joiner and make symbolic link into local directory
-
-echo "cd into ~/kent/src/hg/makeDb/schema"
-cd ~/kent/src/hg/makeDb/schema
-echo ""
-echo "Update files from cvs root"
-cvs update -dP
-echo ""
-echo "Return to previous directory"
-cd $current_dir
-echo ""
-echo "Establish a symbolic link to all.joiner"
-ln -s ~/kent/src/hg/makeDb/schema/all.joiner all.joiner
-echo ""
-echo "Running joinerCheck - this may take quite a while"
-nice joinerCheck -database=$db -keys all.joiner >& $db.complete_release_joinerCheck.txt
-
-# Filter the output
-
-echo ""
-echo "Remove all lines for unique entries and those where hits = hits"
-echo ""
- 
-grep -v unique $db.complete_release_joinerCheck.txt | \
-gawk '{ if (( $3 ~ /^hits/) && ( $4 != $6)) { print $0 }; \
-if ($3 !~ /hits/ ) { print $0 };}'
-