angie: changes by file

branch to review (2010-05-18 to 2010-05-25) v232

• src/hg/hgGetAnn/tests/expected/chrRangePslKeepBin.psl
  • 1.3 lines changed: 5, context: html, text, full: html, text
    Use blatFugu instead of mrna; code now uses all_mrna but that has no bin column in hg15.
• src/hg/hgc/hgc.c
  • 1.1633 lines changed: 1, context: html, text, full: html, text
    In printTrackHtml, we still need hTableForTrack so that we can find a split table given an unsplit table name (to find out update time).
  • 1.1631 lines changed: 3, context: html, text, full: html, text
    htcCdnaAliInWindow: hFindSplitTable needs tdb->table, not track name, in order to work for mrna/est.
• src/hg/lib/hdb.c
  • 1.433 lines changed: 18, context: html, text, full: html, text
    hFindTableInfoWithConn: changed split table logic so that we test mrna/all_mrna and est/all_est before checking whether a chrom has been passed in and split table exists. For mrna and est, now we don't want to know if split tables still exist; it confuses other parts of the code.
  • 1.432 lines changed: 9, context: html, text, full: html, text
    makeDbTableToTrackHash should also use tableName from database (hel->name) and add all_mrna/all_est table if an older trackDb doesn't have that setting.
• src/hg/lib/hgFind.c
  • 1.230 lines changed: 6, context: html, text, full: html, text
    addPslResultToHgp: don't trim initial all_ from table name, we need it now.