src/hg/hgc/t2g.c 1.5

Index: src/hg/hgc/t2g.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgc/t2g.c,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 4 -r1.4 -r1.5
--- src/hg/hgc/t2g.c	20 May 2010 21:07:27 -0000	1.4
+++ src/hg/hgc/t2g.c	20 May 2010 22:28:05 -0000	1.5
@@ -6,8 +6,9 @@
 #include "hgc.h"
 #include "trackDb.h"
 #include "web.h"
 #include "hash.h"
+#include "obscure.h"
 
 void printPubmedLink(char* pmid) 
 {
     printf("<B>PubMed:</B>&nbsp;<A HREF=\"http://www.ncbi.nlm.nih.gov/pubmed/%s\" TARGET=_blank>%s</A><BR>\n", pmid, pmid);
@@ -77,26 +78,14 @@
 
 void doT2gDetails(struct trackDb *tdb, char *item)
 /* text2genome.org custom display */
 {
+int start = cgiInt("o");
+int end = cgiInt("t");
 char versionString[256];
 char dateReference[256];
 char headerTitle[512];
-char **row = NULL;
-char query[512];
-struct sqlResult *sr = NULL;
-struct sqlConnection *conn = hAllocConn(database); // where the heck does "database" come from?
-safef(query, sizeof(query), "select chrom,chromStart,chromEnd,strand from %s "
-      "where name = '%s'", tdb->table, item);
-sr = sqlGetResult(conn, query);
-row = sqlNextRow(sr);
-char *chr = cloneString(row[0]);
-int start = sqlUnsigned(row[1]);
-int end = sqlUnsigned(row[2]);
-char strand[2];
-strand[0] = row[3][0];
-strand[1] = (char)NULL;
-sqlFreeResult(&sr);
+struct sqlConnection *conn = hAllocConn(database);
 
 /* see if hgFixed.trackVersion exists */
 boolean trackVersionExists = hTableExists("hgFixed", "trackVersion");
 
@@ -129,10 +118,19 @@
 else
     safef(headerTitle, sizeof(headerTitle), "%s", item);
 
 genericHeader(tdb, headerTitle);
-printPos(chr, start, end, strand, FALSE, item);
-freeMem(chr);
+
+printf("<B>Position:</B>&nbsp;"
+           "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">",
+                  hgTracksPathAndSettings(), database, seqName, start+1, end);
+char startBuf[64], endBuf[64];
+sprintLongWithCommas(startBuf, start + 1);
+sprintLongWithCommas(endBuf, end);
+printf("%s:%s-%s</A><BR>\n", seqName, startBuf, endBuf);
+long size = end - start;
+sprintLongWithCommas(startBuf, size);
+printf("<B>Genomic Size:</B>&nbsp;%s<BR>\n", startBuf);
 
 char* docId = printArticleInfo(conn, tdb, item);