mary: changes by commit

branch to review (2010-05-18 to 2010-05-25) v232

• forgot to update makedoc with the final version of the find command I used to change the date for calJac3
  • src/hg/makeDb/doc/calJac3.txt 1.12 - lines changed: 1, context: html, text, full: html, text
• moving chain/net shortLabel override for calJac3 up one level
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra 1.29 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.94 - lines changed: 1, context: html, text, full: html, text
• changing instances of [0-9]kb to [0-9] kb. Repeated for bp, Mb, Gb, and nts. For every instance that was changed, I made sure that it was changed to be correctly capitalized (bp, kb, Mb, Gb, nts).
  • src/hg/makeDb/trackDb/chicken/galGal3/description.html 1.10 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/bacEndPairs.html 1.8 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm2/description.html 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droYak2/description.html 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chimpParalogy.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cnpIafrate.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cnpSebat.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeStanfordNRSF.html 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUvaDnaRepOrigins.html 1.17 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encode_UVA_DNARep.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/syntenyMouse.html 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/humMusL.html 1.6 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/syntenyMouse.html 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/syntenyRat.html 1.11 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg15/syntenyMouse.html 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg15/syntenyRat.html 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/allb100i96.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/cnp.html 1.14 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/fosmidDiscordant.html 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/hetChimp.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/rhb100i96.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/syntenyMm3.html 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/syntenyMm4.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/syntenyRn3.html 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/cnp.html 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeRegulomeDnaseArray.html 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/ensRatMusHom.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/exoniphyGene.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/hars.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/syntenyMm4.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/syntenyMm5.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/syntenyRn3.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cnp.html 1.19 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/divMKAR.html 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/eioJcviNAS.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeRegulomeDnaseArray.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/fantomCageGraphTop.html 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/hars.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/laminB1Super.html 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgSnp.html 1.14 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgSnpHgwdev.html 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/sangamoDnaseHs.html 1.6 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/snpArray.html 1.18 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/snpArrayBeta.html 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/snpArrayWith1M.html 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uppsalaChipSignal.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uppsalaChipSites.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uppsalaChipSuper.html 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOcc.html 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccA375.html 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccDennis.html 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccMec.html 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html 1.12 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.html 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/pgSnp.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/stanfordNRSF.html 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/braFlo1/description.html 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/braFlo1/gold.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac1/description.html 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm3/syntenyHuman.html 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm3/syntenyRat.html 1.8 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm4/syntenyHg16.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm4/syntenyRn3.html 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm5/ensRatMusHg17.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/broadChromatinChIPSeq.html 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/rest.html 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/recombRateMouse.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/gold.html 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/parsPValues.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna1/description.html 1.9 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna1/gold.html 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/recombRateRat.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn1/ensRatMusHom.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/ensRatMusHom.html 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/syntenyHg15.html 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rgdRatQtl.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/ctgPos.html 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/gold.html 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/gasAcu1/description.html 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/syntenyHuman.html 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/syntenyMouse.html 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/syntenyRat.html 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/urchin/strPur1/description.html 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/urchin/strPur2/description.html 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/25mersRepeats.html 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer1/ctgPos2.html 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer2/ctgPos2.html 1.2 - lines changed: 1, context: html, text, full: html, text
• adding overrides so default position looks nice
  • src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.chainNet.ra 1.5 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra 1.9 - lines changed: 7, context: html, text, full: html, text
• adding better examples to description page for calJac3
  • src/hg/makeDb/trackDb/marmoset/calJac3/description.html 1.3 - lines changed: 12, context: html, text, full: html, text