src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.95
1.95 2010/06/03 23:00:28 mary
changing calJac1 chain/nets so that they are for most dbs and for hg18, ornAna1 and monDom4
Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.94
retrieving revision 1.95
diff -b -B -U 1000000 -r1.94 -r1.95
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra 18 May 2010 23:55:56 -0000 1.94
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra 3 Jun 2010 23:00:28 -0000 1.95
@@ -1,4001 +1,4001 @@
# "$Id$";
track chainNetAplCal1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 655.3
color 0,0,0
altColor 255,255,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb aplCal1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetAplCal1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetAplCal1
spectrum on
track chainAplCal1
parent chainNetAplCal1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain aplCal1
html chainNet
track chainNetAplCal1Viewnet
shortLabel Net
view net
visibility dense
parent chainNetAplCal1
track netAplCal1
parent chainNetAplCal1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign aplCal1 chainAplCal1
html chainNet
track chainNetFr2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetFr2
spectrum on
track chainFr2
parent chainNetFr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain fr2
html chainNet
track chainNetFr2Viewnet
shortLabel Net
view net
visibility full
parent chainNetFr2
track netFr2
parent chainNetFr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign fr2 chainFr2
html chainNet
track chainNetFr1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb fr1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetFr1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetFr1
spectrum on
track chainFr1
parent chainNetFr1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain fr1
html chainNet
track chainNetFr1Viewnet
shortLabel Net
view net
visibility full
parent chainNetFr1
track netFr1
parent chainNetFr1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign fr1 chainFr1
html chainNet
track chainNetTetNig2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetTetNig2
spectrum on
track chainTetNig2
parent chainNetTetNig2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain tetNig2
html chainNet
track chainNetTetNig2Viewnet
shortLabel Net
view net
visibility full
parent chainNetTetNig2
track netTetNig2
parent chainNetTetNig2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign tetNig2 chainTetNig2
html chainNet
track chainNetTetNig1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb tetNig1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTetNig1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetTetNig1
spectrum on
track chainTetNig1
parent chainNetTetNig1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain tetNig1
html chainNet
track chainNetTetNig1Viewnet
shortLabel Net
view net
visibility full
parent chainNetTetNig1
track netTetNig1
parent chainNetTetNig1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign tetNig1 chainTetNig1
html chainNet
track chainNetDanRer6
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer6
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer6Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDanRer6
spectrum on
track chainDanRer6
parent chainNetDanRer6Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer6
html chainNet
track chainNetDanRer6Viewnet
shortLabel Net
view net
visibility full
parent chainNetDanRer6
track netDanRer6
parent chainNetDanRer6Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer6 chainDanRer6
html chainNet
track chainNetDanRer5
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer5
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer5Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDanRer5
spectrum on
track chainDanRer5
parent chainNetDanRer5Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer5
html chainNet
track chainNetDanRer5Viewnet
shortLabel Net
view net
visibility full
parent chainNetDanRer5
track netDanRer5
parent chainNetDanRer5Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer5 chainDanRer5
html chainNet
track chainNetDanRer4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer4
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer4Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDanRer4
spectrum on
track chainDanRer4
parent chainNetDanRer4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer4
html chainNet
track chainNetDanRer4Viewnet
shortLabel Net
view net
visibility full
parent chainNetDanRer4
track netDanRer4
parent chainNetDanRer4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer4 chainDanRer4
html chainNet
track chainNetDanRer3
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer3
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer3Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDanRer3
spectrum on
track chainDanRer3
parent chainNetDanRer3Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer3
html chainNet
track chainNetDanRer3Viewnet
shortLabel Net
view net
visibility full
parent chainNetDanRer3
track netDanRer3
parent chainNetDanRer3Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer3 chainDanRer3
html chainNet
track chainNetDanRer2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDanRer2
spectrum on
track chainDanRer2
parent chainNetDanRer2Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer2
html chainNet
track chainNetDanRer2Viewnet
shortLabel Net
view net
visibility full
parent chainNetDanRer2
track netDanRer2
parent chainNetDanRer2Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer2 chainDanRer2
html chainNet
track chainNetDanRer1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb danRer1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetDanRer1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDanRer1
spectrum on
track chainDanRer1
parent chainNetDanRer1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain danRer1
html chainNet
track chainNetDanRer1Viewnet
shortLabel Net
view net
visibility full
parent chainNetDanRer1
track netDanRer1
parent chainNetDanRer1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign danRer1 chainDanRer1
html chainNet
track chainNetXenTro2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetXenTro2
spectrum on
track chainXenTro2
parent chainNetXenTro2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain xenTro2
html chainNet
track chainNetXenTro2Viewnet
shortLabel Net
view net
visibility full
parent chainNetXenTro2
track netXenTro2
parent chainNetXenTro2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign xenTro2 chainXenTro2
html chainNet
track chainNetXenTro1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 159
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb xenTro1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetXenTro1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetXenTro1
spectrum on
track chainXenTro1
parent chainNetXenTro1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain xenTro1
html chainNet
track chainNetXenTro1Viewnet
shortLabel Net
view net
visibility full
parent chainNetXenTro1
track netXenTro1
parent chainNetXenTro1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign xenTro1 chainXenTro1
html chainNet
track chainNetOryLat2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat2
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetOryLat2
spectrum on
track chainOryLat2
parent chainNetOryLat2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryLat2
otherDb oryLat2
html chainNet
track chainNetOryLat2Viewnet
shortLabel Net
view net
visibility full
parent chainNetOryLat2
track netOryLat2
parent chainNetOryLat2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryLat2 chainOryLat2
otherDb oryLat2
html chainNet
# release alpha since oryLat1 is obsolete
track chainNetOryLat1
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 165.5
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb oryLat1
chainMinScore 3000
chainLinearGap medium
html chainNet
track chainNetOryLat1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetOryLat1
spectrum on
track chainOryLat1
release alpha
parent chainNetOryLat1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryLat1
otherDb oryLat1
html chainNet
track chainNetOryLat1Viewnet
shortLabel Net
view net
visibility full
parent chainNetOryLat1
track netOryLat1
release alpha
parent chainNetOryLat1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryLat1 chainOryLat1
otherDb oryLat1
html chainNet
track chainNetGasAcu1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb gasAcu1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGasAcu1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetGasAcu1
spectrum on
track chainGasAcu1
parent chainNetGasAcu1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain gasAcu1
html chainNet
track chainNetGasAcu1Viewnet
shortLabel Net
view net
visibility full
parent chainNetGasAcu1
track netGasAcu1
parent chainNetGasAcu1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign gasAcu1 chainGasAcu1
html chainNet
track chainNetGalGal3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb galGal3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetGalGal3Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetGalGal3
spectrum on
track chainGalGal3
parent chainNetGalGal3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain galGal3
html chainNet
track chainNetGalGal3Viewnet
shortLabel Net
view net
visibility full
parent chainNetGalGal3
track netGalGal3
parent chainNetGalGal3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign galGal3 chainGalGal3
html chainNet
track chainNetGalGal2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb galGal2
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetGalGal2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetGalGal2
spectrum on
track chainGalGal2
parent chainNetGalGal2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain galGal2
html chainNet
track chainNetGalGal2Viewnet
shortLabel Net
view net
visibility full
parent chainNetGalGal2
track netGalGal2
parent chainNetGalGal2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign galGal2 chainGalGal2
html chainNet
track chainNetTaeGut1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 181
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
matrixHeader A, C, G, T
otherDb taeGut1
chainMinScore 5000
chainLinearGap loose
spectrum on
html chainNet
track chainNetTaeGut1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetTaeGut1
spectrum on
track chainTaeGut1
parent chainNetTaeGut1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain taeGut1
html chainNet
track chainNetTaeGut1Viewnet
shortLabel Net
view net
visibility full
parent chainNetTaeGut1
track netTaeGut1
parent chainNetTaeGut1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign taeGut1 chainTaeGut1
html chainNet
track chainNetOrnAna1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 191
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ornAna1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOrnAna1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetOrnAna1
spectrum on
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matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor3Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetCavPor3
spectrum on
track chainCavPor3
parent chainNetCavPor3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain cavPor3
html chainNet
track chainNetCavPor3Viewnet
shortLabel Net
view net
visibility full
parent chainNetCavPor3
track netCavPor3
parent chainNetCavPor3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign cavPor3 chainCavPor3
html chainNet
# release alpha until cavPor2 individual chain/net tracks phased out
track chainNetCavPor2
release alpha
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb cavPor2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCavPor2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetCavPor2
spectrum on
track chainCavPor2
release alpha
parent chainNetCavPor2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain cavPor2
html chainNet
track chainNetCavPor2Viewnet
shortLabel Net
view net
visibility full
parent chainNetCavPor2
track netCavPor2
release alpha
parent chainNetCavPor2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign cavPor2 chainCavPor2
html chainNet
track chainNetOryCun2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetOryCun2
spectrum on
track chainOryCun2
parent chainNetOryCun2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryCun2
html chainNet
track chainNetOryCun2Viewnet
shortLabel Net
view net
visibility full
parent chainNetOryCun2
track netOryCun2
parent chainNetOryCun2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryCun2 chainOryCun2
html chainNet
track chainNetOryCun1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 209
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oryCun1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOryCun1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetOryCun1
spectrum on
track chainOryCun1
parent chainNetOryCun1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oryCun1
html chainNet
track chainNetOryCun1Viewnet
shortLabel Net
view net
visibility full
parent chainNetOryCun1
track netOryCun1
parent chainNetOryCun1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oryCun1 chainOryCun1
html chainNet
track chainNetEquCab2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetEquCab2
spectrum on
track chainEquCab2
parent chainNetEquCab2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain equCab2
html chainNet
track chainNetEquCab2Viewnet
shortLabel Net
view net
visibility full
parent chainNetEquCab2
track netEquCab2
parent chainNetEquCab2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign equCab2 chainEquCab2
html chainNet
track chainNetEquCab1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb equCab1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEquCab1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetEquCab1
spectrum on
track chainEquCab1
parent chainNetEquCab1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain equCab1
html chainNet
track chainNetEquCab1Viewnet
shortLabel Net
view net
visibility full
parent chainNetEquCab1
track netEquCab1
parent chainNetEquCab1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign equCab1 chainEquCab1
html chainNet
track chainNetEchTel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb echTel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetEchTel1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetEchTel1
spectrum on
track chainEchTel1
parent chainNetEchTel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain echTel1
html chainNet
track chainNetEchTel1Viewnet
shortLabel Net
view net
visibility full
parent chainNetEchTel1
track netEchTel1
parent chainNetEchTel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign echTel1 chainEchTel1
html chainNet
track chainNetDasNov2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDasNov2
spectrum on
track chainDasNov2
parent chainNetDasNov2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain dasNov2
html chainNet
track chainNetDasNov2Viewnet
shortLabel Net
view net
visibility full
parent chainNetDasNov2
track netDasNov2
parent chainNetDasNov2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign dasNov2 chainDasNov2
html chainNet
track chainNetDasNov1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb dasNov1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetDasNov1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetDasNov1
spectrum on
track chainDasNov1
parent chainNetDasNov1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain dasNov1
html chainNet
track chainNetDasNov1Viewnet
shortLabel Net
view net
visibility full
parent chainNetDasNov1
track netDasNov1
parent chainNetDasNov1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign dasNov1 chainDasNov1
html chainNet
track chainNetSusScr2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 475.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb susScr2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSusScr2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetSusScr2
spectrum on
track chainSusScr2
parent chainNetSusScr2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain susScr2
html chainNet
track chainNetSusScr2Viewnet
shortLabel Net
view net
visibility full
parent chainNetSusScr2
track netSusScr2
parent chainNetSusScr2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign susScr2 chainSusScr2
html chainNet
track chainNetSusScr1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 475.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb susScr1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetSusScr1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetSusScr1
spectrum on
track chainSusScr1
parent chainNetSusScr1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain susScr1
html chainNet
track chainNetSusScr1Viewnet
shortLabel Net
view net
visibility full
parent chainNetSusScr1
track netSusScr1
parent chainNetSusScr1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign susScr1 chainSusScr1
html chainNet
track chainNetOviAri1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 230
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb oviAri1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetOviAri1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetOviAri1
spectrum on
track chainOviAri1
parent chainNetOviAri1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain oviAri1
html chainNet
track chainNetOviAri1Viewnet
shortLabel Net
view net
visibility full
parent chainNetOviAri1
track netOviAri1
parent chainNetOviAri1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign oviAri1 chainOviAri1
html chainNet
track chainNetBosTau4
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau4
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau4Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetBosTau4
spectrum on
track chainBosTau4
parent chainNetBosTau4Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain bosTau4
html chainNet
track chainNetBosTau4Viewnet
shortLabel Net
view net
visibility full
parent chainNetBosTau4
track netBosTau4
parent chainNetBosTau4Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign bosTau4 chainBosTau4
html chainNet
track chainNetBosTau3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau3Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetBosTau3
spectrum on
track chainBosTau3
parent chainNetBosTau3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain bosTau3
html chainNet
track chainNetBosTau3Viewnet
shortLabel Net
view net
visibility full
parent chainNetBosTau3
track netBosTau3
parent chainNetBosTau3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign bosTau3 chainBosTau3
html chainNet
track chainNetBosTau2
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetBosTau2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetBosTau2
spectrum on
track chainBosTau2
parent chainNetBosTau2Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain bosTau2
html chainNet
track chainNetBosTau2Viewnet
shortLabel Net
view net
visibility full
parent chainNetBosTau2
track netBosTau2
parent chainNetBosTau2Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign bosTau2 chainBosTau2
html chainNet
track chainNetBosTau1
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb bosTau1
chainMinScore 1000
chainLinearGap loose
spectrum on
html chainNet
track chainNetBosTau1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetBosTau1
spectrum on
track chainBosTau1
parent chainNetBosTau1Viewchain
subGroups view=chain
shortLabel $o_db Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain bosTau1
html chainNet
track chainNetBosTau1Viewnet
shortLabel Net
view net
visibility full
parent chainNetBosTau1
track netBosTau1
parent chainNetBosTau1Viewnet
subGroups view=net
shortLabel $o_db Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign bosTau1 chainBosTau1
html chainNet
track chainNetAilMel1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 415.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb ailMel1
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetAilMel1Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetAilMel1
spectrum on
track chainAilMel1
parent chainNetAilMel1Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain ailMel1
html chainNet
track chainNetAilMel1Viewnet
shortLabel Net
view net
visibility full
parent chainNetAilMel1
track netAilMel1
parent chainNetAilMel1Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign ailMel1 chainAilMel1
html chainNet
track chainNetCanFam2
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb canFam2
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetCanFam2Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetCanFam2
spectrum on
track chainCanFam2
parent chainNetCanFam2Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain canFam2
html chainNet
track chainNetCanFam2Viewnet
shortLabel Net
view net
visibility full
parent chainNetCanFam2
track netCanFam2
parent chainNetCanFam2Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign canFam2 chainCanFam2
html chainNet
track chainNetFelCatV17e
compositeTrack on
shortLabel $o_db Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 430.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb felCatV17e
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetFelCatV17eViewchain
shortLabel Chain
view chain
visibility pack
parent chainNetFelCatV17e
spectrum on
track chainFelCatV17e
parent chainNetFelCatV17eViewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain felCatV17e
html chainNet
track chainNetFelCatV17eViewnet
shortLabel Net
view net
visibility full
parent chainNetFelCatV17e
track netFelCatV17e
parent chainNetFelCatV17eViewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign felCatV17e chainFelCatV17e
html chainNet
track chainNetFelCat3
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 240
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb felCat3
chainMinScore 3000
chainLinearGap medium
spectrum on
html chainNet
track chainNetFelCat3Viewchain
shortLabel Chain
view chain
visibility pack
parent chainNetFelCat3
spectrum on
track chainFelCat3
parent chainNetFelCat3Viewchain
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date) Chained Alignments
type chain felCat3
html chainNet
track chainNetFelCat3Viewnet
shortLabel Net
view net
visibility full
parent chainNetFelCat3
track netFelCat3
parent chainNetFelCat3Viewnet
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date) Alignment Net
type netAlign felCat3 chainFelCat3
html chainNet
track chainNetMicMur1
compositeTrack on
shortLabel $o_Organism Chain/Net
longLabel $o_Organism ($o_date), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
dragAndDrop subTracks
visibility hide
group compGeno
noInherit on
priority 290.3
color 0,0,0
altColor 100,50,0
type bed 3
sortOrder view=+
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
otherDb MicMur1
chainMinScore 3000
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shortLabel Chain
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track chainNetTupBel1Viewchain
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