braney: changes by file

review to branch (2010-06-01 to 2010-06-07) v233

• src/hg/encode/DAFs/2.0/gisRnaPet.daf
  • 1.4 lines changed: 14, context: html, text, full: html, text
    take out fastq
• src/hg/hgGene/altSplice.c
  • 1.14 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgGenome/mainPage.c
  • 1.29 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgTables/correlatePlot.c
  • 1.18 lines changed: 17, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgTracks/coverageTrack.c
  • 1.8 lines changed: 1, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgTracks/hgTracks.c
  • 1.1650 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgTracks/multiWig.c
  • 1.5 lines changed: 3, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgTracks/simpleTracks.c
  • 1.149 lines changed: 4, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgc/hgc.c
  • 1.1637 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/hgsqlTableDate/hgsqlTableDate.c
  • 1.1 lines changed: 50, context: html, text, full: html, text
    a utility to touch a file with the date of an SQL table (for use in a makefile)
• src/hg/hgsqlTableDate/makefile
  • 1.1 lines changed: 18, context: html, text, full: html, text
    a utility to touch a file with the date of an SQL table (for use in a makefile)
• src/hg/inc/hvGfx.h
  • 1.6 lines changed: 12, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/lib/hvGfx.c
  • 1.6 lines changed: 3, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/makeDb/trackDb/checkMetaDb
  • 1.1 lines changed: 58, context: html, text, full: html, text
    utilities to check to see if metaDb needs to be rebuilt, and do so if necessary
• src/hg/makeDb/trackDb/makeMetaDb
  • 1.3 lines changed: 18, context: html, text, full: html, text
    check dates before rebuilding metaDb
  • 1.2 lines changed: 5, context: html, text, full: html, text
    D'oh! check for no metaDb directory
  • 1.1 lines changed: 64, context: html, text, full: html, text
    make the metaDb table
• src/hg/makeDb/trackDb/makefile
  • 1.291 lines changed: 4, context: html, text, full: html, text
    check dates before rebuilding metaDb
  • 1.290 lines changed: 4, context: html, text, full: html, text
    added the build of metaDb
• src/hg/makeDb/trackDb/makefile.metaDb
  • 1.1 lines changed: 3, context: html, text, full: html, text
    utilities to check to see if metaDb needs to be rebuilt, and do so if necessary
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.1001 lines changed: 1, context: html, text, full: html, text
    move HudsonAlphaRnaSeq to correct position
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html
  • 1.14 lines changed: 4, context: html, text, full: html, text
    add release notes
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    move accession's to labVersion
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.alpha.ra
  • 1.7 lines changed: 145, context: html, text, full: html, text
    moving this track into the proper place
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html
  • 1.3 lines changed: 18, context: html, text, full: html, text
    add addresses for rami, flo, and tim
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.ra
  • 1.1 lines changed: 141, context: html, text, full: html, text
    put this track in its proper place
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/makefile
  • 1.1 lines changed: 28, context: html, text, full: html, text
    utilities to check to see if metaDb needs to be rebuilt, and do so if necessary
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • 1.1 lines changed: 7, context: html, text, full: html, text
    add makefile
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile
  • 1.1 lines changed: 6, context: html, text, full: html, text
    add for mm9
• src/hg/protein/lib/doTracks.c
  • 1.24 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/protein/pbGlobal/pbGlobal.c
  • 1.48 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/hg/protein/pbTracks/pbTracks.c
  • 1.60 lines changed: 5, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/inc/common.mk
  • 1.81 lines changed: 3, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/inc/memgfx.h
  • 1.30 lines changed: 48, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/inc/vGfx.h
  • 1.16 lines changed: 13, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/lib/bwgCreate.c
  • 1.26 lines changed: 13, context: html, text, full: html, text
    ignore initial browser and track lines
• src/lib/gifwrite.c
  • 1.9 lines changed: 1, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/lib/memgfx.c
  • 1.54 lines changed: 150, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/lib/pngwrite.c
  • 1.4 lines changed: 8, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/lib/pscmGfx.c
  • 1.29 lines changed: 2, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/lib/vGfxPrivate.h
  • 1.11 lines changed: 2, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)
• src/lib/vGif.c
  • 1.6 lines changed: 3, context: html, text, full: html, text
    add support for 32-bit color (make USE_PNG have global consequence)