src/utils/qa/makefile 1.124
1.124 2010/06/04 01:41:19 rhead
Added findBrokenLinks.csh and a comment about how to install in /cluster/bin/scripts since Hiram changed the SCRIPTS defined in common.mk.
Index: src/utils/qa/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/makefile,v
retrieving revision 1.123
retrieving revision 1.124
diff -b -B -U 1000000 -r1.123 -r1.124
--- src/utils/qa/makefile 9 Apr 2010 00:18:06 -0000 1.123
+++ src/utils/qa/makefile 4 Jun 2010 01:41:19 -0000 1.124
@@ -1,125 +1,128 @@
include ../../inc/common.mk
-# ${SCRIPTS} is /cluster/bin/scripts (defined in kent/src/inc/common.mk)
+# ${SCRIPTS} is ${HOME}/bin/scripts (defined in kent/src/inc/common.mk)
+# to install in /cluster/bin/scripts/, run in this directory:
+# make SCRIPTS=/cluster/bin/scripts
install:
${CVS} -q up -d -P .
cp -p --remove-destination activeGenbank.csh ${SCRIPTS}
cp -p --remove-destination alertBqueue.csh ${SCRIPTS}
cp -p --remove-destination allowTraffic.csh ${SCRIPTS}
cp -p --remove-destination backupCentral.csh ${SCRIPTS}
cp -p --remove-destination bigPush.csh ${SCRIPTS}
cp -p --remove-destination browserUsage.csh ${SCRIPTS}
cp -p --remove-destination catchBot.csh ${SCRIPTS}
cp -p --remove-destination chain.csh ${SCRIPTS}
cp -p --remove-destination chain2.csh ${SCRIPTS}
cp -p --remove-destination chainNetTrio.csh ${SCRIPTS}
cp -p --remove-destination checkAllStaticLinks.csh ${SCRIPTS}
cp -p --remove-destination checkBOT.csh ${SCRIPTS}
cp -p --remove-destination checkCoverage.csh ${SCRIPTS}
cp -p --remove-destination checkEncodeRegions.csh ${SCRIPTS}
cp -p --remove-destination checkGbdbDiffs.csh ${SCRIPTS}
cp -p --remove-destination checkHitter.csh ${SCRIPTS}
cp -p --remove-destination checkMachineName.csh ${SCRIPTS}
cp -p --remove-destination checkMetaData.csh ${SCRIPTS}
cp -p --remove-destination checkMetaAday.csh ${SCRIPTS}
cp -p --remove-destination checkOffend.csh ${SCRIPTS}
cp -p --remove-destination checkPushedFiles.csh ${SCRIPTS}
cp -p --remove-destination checkScaffoldGaps.csh ${SCRIPTS}
cp -p --remove-destination checkStaticLinks.csh ${SCRIPTS}
cp -p --remove-destination checkStoreUnits.csh ${SCRIPTS}
cp -p --remove-destination checkSync.csh ${SCRIPTS}
cp -p --remove-destination checkSyncAll.csh ${SCRIPTS}
cp -p --remove-destination checkTableStatus.csh ${SCRIPTS}
cp -p --remove-destination checkTrackUiLinks.csh ${SCRIPTS}
cp -p --remove-destination checkWigFiles.csh ${SCRIPTS}
cp -p --remove-destination commTrio.csh ${SCRIPTS}
cp -p --remove-destination compareHgFindSpecs.csh ${SCRIPTS}
cp -p --remove-destination comparePublic.csh ${SCRIPTS}
cp -p --remove-destination compareTableLists.csh ${SCRIPTS}
cp -p --remove-destination compareTableToFile.csh ${SCRIPTS}
cp -p --remove-destination compareTrackDbAll.csh ${SCRIPTS}
cp -p --remove-destination compareTrackDbFast.csh ${SCRIPTS}
cp -p --remove-destination compareTrackDbs.csh ${SCRIPTS}
cp -p --remove-destination compareWholeColumn.csh ${SCRIPTS}
cp -p --remove-destination compareWholeTable.csh ${SCRIPTS}
cp -p --remove-destination copyExtSeqRows.csh ${SCRIPTS}
cp -p --remove-destination countPerChrom.csh ${SCRIPTS}
cp -p --remove-destination countRows.csh ${SCRIPTS}
cp -p --remove-destination cronLinks.csh ${SCRIPTS}
cp -p --remove-destination databaseAday.csh ${SCRIPTS}
cp -p --remove-destination dbUpdateTimes.csh ${SCRIPTS}
cp -p --remove-destination doGenbankTests ${SCRIPTS}
cp -p --remove-destination dropUserTables.csh ${SCRIPTS}
cp -p --remove-destination dumpEmpty.csh ${SCRIPTS}
cp -p --remove-destination findDbPartners.csh ${SCRIPTS}
cp -p --remove-destination findBigFiles.csh ${SCRIPTS}
cp -p --remove-destination findBlatServer.csh ${SCRIPTS}
+ cp -p --remove-destination findBrokenLinks.csh ${SCRIPTS}
cp -p --remove-destination findColumn.csh ${SCRIPTS}
cp -p --remove-destination findKgTableSet.csh ${SCRIPTS}
cp -p --remove-destination findLevel ${SCRIPTS}
cp -p --remove-destination findMtNets.csh ${SCRIPTS}
cp -p --remove-destination findNewTables.csh ${SCRIPTS}
cp -p --remove-destination findOrg.csh ${SCRIPTS}
cp -p --remove-destination findPushQLocks.csh ${SCRIPTS}
cp -p --remove-destination gc-stats.pl ${SCRIPTS}
cp -p --remove-destination genbankRun.csh ${SCRIPTS}
cp -p --remove-destination generic_range_check.csh ${SCRIPTS}
cp -p --remove-destination getAssemblies.csh ${SCRIPTS}
cp -p --remove-destination getChainLines.csh ${SCRIPTS}
cp -p --remove-destination getChromFieldName.csh ${SCRIPTS}
cp -p --remove-destination getChromlist.csh ${SCRIPTS}
cp -p --remove-destination getConservation.csh ${SCRIPTS}
cp -p --remove-destination getDbSize.csh ${SCRIPTS}
cp -p --remove-destination getField.csh ${SCRIPTS}
cp -p --remove-destination getGbdbBeta.csh ${SCRIPTS}
cp -p --remove-destination getJoinerKeyErrors.pl ${SCRIPTS}
cp -p --remove-destination getLastMonth.csh ${SCRIPTS}
cp -p --remove-destination getLiftOver.csh ${SCRIPTS}
cp -p --remove-destination getMatrixLines.csh ${SCRIPTS}
cp -p --remove-destination getMonthLastYear.csh ${SCRIPTS}
cp -p --remove-destination getOrderKey.csh ${SCRIPTS}
cp -p --remove-destination getRRdatabases.csh ${SCRIPTS}
cp -p --remove-destination getRRdumpfile.csh ${SCRIPTS}
cp -p --remove-destination getRRtableStatus.csh ${SCRIPTS}
cp -p --remove-destination getRRtables.csh ${SCRIPTS}
cp -p --remove-destination getTableSize.csh ${SCRIPTS}
cp -p --remove-destination getTableStatus.csh ${SCRIPTS}
cp -p --remove-destination getTrackName.csh ${SCRIPTS}
cp -p --remove-destination getSplit.csh ${SCRIPTS}
cp -p --remove-destination getVersion.csh ${SCRIPTS}
cp -p --remove-destination getYield.csh ${SCRIPTS}
cp -p --remove-destination graph.csh ${SCRIPTS}
cp -p --remove-destination igtc.csh ${SCRIPTS}
cp -p --remove-destination joinerBatchKeys.csh ${SCRIPTS}
cp -p --remove-destination joinerBatchTimes.csh ${SCRIPTS}
cp -p --remove-destination kgTables ${SCRIPTS}
cp -p --remove-destination gsTables ${SCRIPTS}
cp -p --remove-destination pbTables ${SCRIPTS}
cp -p --remove-destination knownGene.csh ${SCRIPTS}
cp -p --remove-destination linkCheckExclude ${SCRIPTS}
cp -p --remove-destination makeFilledBlockBed.csh ${SCRIPTS}
cp -p --remove-destination makeTouchCommands.csh ${SCRIPTS}
cp -p --remove-destination makeUniProtFile.csh ${SCRIPTS}
cp -p --remove-destination net.csh ${SCRIPTS}
cp -p --remove-destination proteins.csh ${SCRIPTS}
cp -p --remove-destination printMan.csh ${SCRIPTS}
cp -p --remove-destination qaConfig.csh ${SCRIPTS}
cp -p --remove-destination qaConfig.bash ${SCRIPTS}
cp -p --remove-destination qaEncodeTracks.csh ${SCRIPTS}
cp -p --remove-destination qaEnsGenes.csh ${SCRIPTS}
cp -p --remove-destination qaThis.csh ${SCRIPTS}
cp -p --remove-destination realTime.csh ${SCRIPTS}
cp -p --remove-destination removeAlphas ${SCRIPTS}
cp -p --remove-destination retirePushQ.csh ${SCRIPTS}
cp -p --remove-destination runBits.csh ${SCRIPTS}
cp -p --remove-destination runJoiner.csh ${SCRIPTS}
cp -p --remove-destination sessionStats.csh ${SCRIPTS}
cp -p --remove-destination showProcesslist.csh ${SCRIPTS}
cp -p --remove-destination staticpaths ${SCRIPTS}
cp -p --remove-destination syncAday.csh ${SCRIPTS}
cp -p --remove-destination tableDumpDates.csh ${SCRIPTS}
cp -p --remove-destination trackDbGlobal.csh ${SCRIPTS}
cp -p --remove-destination updateTimes.csh ${SCRIPTS}
cp -p --remove-destination updateTimesDb.csh ${SCRIPTS}
cp -p --remove-destination whoMadeIt.csh ${SCRIPTS}