src/hg/instinct/hgBamBam/hgBamBam.c 1.6

Index: src/hg/instinct/hgBamBam/hgBamBam.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/hgBamBam/hgBamBam.c,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/instinct/hgBamBam/hgBamBam.c	31 May 2010 22:07:03 -0000	1.5
+++ src/hg/instinct/hgBamBam/hgBamBam.c	1 Jun 2010 03:45:09 -0000	1.6
@@ -160,10 +160,10 @@
 float minVal = 0;
 float tmpMax = 0;
 struct bed *bed = getBed(conn, tableName, pos, 4, &minVal, &tmpMax);
 
-//if (maxVal == FLOAT_NULL)
-maxVal = tmpMax;
+if (maxVal == FLOAT_NULL)
+    maxVal = tmpMax;
 
 struct settings *settings = initSettings(conn, pos, title, width, height, 0.0, maxVal);
 
 char *filename = copyNumberGif(conn, bed, settings, suffix, 0.0, col);
@@ -360,11 +360,16 @@
     return;
 
 struct json *js = newJson();
 float maxVal = FLOAT_NULL;
-maxVal = drawCopy(conn, js, pos, width, height, name, "cnv", "Overall Copy Number", FLOAT_NULL, 0.0, MG_BLACK);
-drawCopy(conn, js, pos, width, height, name, "major", "Majority Copy Number", maxVal, 0.0, MG_RED);
-drawCopy(conn, js, pos, width, height, name, "minor", "Minority Copy Number", maxVal, 0.0, MG_BLUE);
+drawCopy(conn, js, pos, width, height, name, 
+	 "cnv", "Overall Copy Number", FLOAT_NULL, 0.0, MG_BLACK);
+
+/* set max val according to majority copy number */
+maxVal = drawCopy(conn, js, pos, width, height, name, 
+		  "major", "Majority Copy Number", maxVal, 0.0, MG_RED);
+drawCopy(conn, js, pos, width, height, name, 
+	 "minor", "Minority Copy Number", maxVal, 0.0, MG_BLUE);
 
 drawSNPs(conn, js, pos, width, name, "snps");
 drawInterBreaks(conn, js, pos, width, name, "breaks");
 drawIntraBreaks(conn, js, pos, width, name, "breaks");
@@ -419,9 +424,10 @@
 else
     {
     char cmd[1024];
     safef(cmd, sizeof(cmd),
-	  "echo 'User %s wanted you to check out:\n\n%s\n\nThank you!' | mail -s \"UCSC BamBam Browser link\" -c %s %s",
+	  "echo 'User %s wanted you to check out:\n\n%s\n\nCourtesy of the UCSC BamBam Browser.'"
+	  "| mail -s \"UCSC BamBam Browser link\" -c %s %s",
 	  emailFrom, link, emailFrom, emailTo);
   
     int result = system(cmd);
     if (result == -1)