src/hg/instinct/hgBamBam/hgBamBam.h 1.2

Index: src/hg/instinct/hgBamBam/hgBamBam.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/hgBamBam/hgBamBam.h,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/hg/instinct/hgBamBam/hgBamBam.h	25 May 2010 20:22:45 -0000	1.1
+++ src/hg/instinct/hgBamBam/hgBamBam.h	26 May 2010 05:20:33 -0000	1.2
@@ -28,8 +28,25 @@
 
 /* ---- Global variables declared in hgHeatmap.c */
 extern struct cart *cart;	/* This holds cgi and other variables between clicks. */
 
+struct breaks {
+    struct breaks *next;
+
+    char *chrom;
+    int chromStart;
+    int chromEnd;
+    char strand[2];
+
+    char *chrom2;
+    int chromStart2;
+    int chromEnd2;
+    char strand2[2];
+    
+    int support;
+    float qual;
+};
+
 struct chromLay {
     struct chromLay *next;
 
     char *chrom;
@@ -85,5 +102,8 @@
 char *genomeScaleGif(struct settings *settings);
     
 char *annotationGif(struct settings *settings, char *tableName);
 
+char *breaksGif(struct sqlConnection *conn, struct breaks *breaks,
+		struct settings *settings);
+
 #endif /* HGBAMBAM_H */