src/hg/makeDb/trackDb/trackDb.ra 1.635
1.635 2010/05/27 17:18:14 baertsch
add search for retrogene track
Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.634
retrieving revision 1.635
diff -b -B -U 4 -r1.634 -r1.635
--- src/hg/makeDb/trackDb/trackDb.ra 27 May 2010 14:45:59 -0000 1.634
+++ src/hg/makeDb/trackDb/trackDb.ra 27 May 2010 17:18:14 -0000 1.635
@@ -2632,25 +2632,26 @@
searchType refGene
searchPriority 2.1
grepIndex refLinkGrep/refLink.mrnaAccProduct
-searchTable retroMrnaInfo
+searchTable ucscRetroInfo
searchType bed
searchMethod prefix
searchPriority 3.5
-searchName retroMrnaInfoRefSeq
-searchTable retroMrnaInfo
+searchName ucscRetroInfoRefSeq
+searchTable ucscRetroInfo
+searchDescription Retroposed Genes, Including Pseudogenes [ucscRetroAli]
query select chrom, chromStart,chromEnd, refSeq from %s where refSeq = '%s'
xrefTable refLink
xrefQuery select mrnaAcc, name from %s where name like '%s%%'
-searchPriority 3.51
+searchPriority 3.52
-searchTable pseudoGeneLink
-query select chrom, chromStart,chromEnd, refSeq from %s where refSeq = '%s'
-xrefTable refLink
-xrefQuery select mrnaAcc, name from %s where name like '%s%%'
-searchPriority 2.5
+searchName ucscRetroInfoMrna
+searchTable ucscRetroInfo
+searchDescription Retroposed Genes, Including Pseudogenes [ucscRetroAli]
+query select chrom, chromStart,chromEnd, name from %s where name like '%s%%'
+searchPriority 3.51
searchName pseudoGeneUniProt
searchTable pseudoGeneLink
query select chrom, chromStart,chromEnd, kgName from %s where kgName = '%s'