src/hg/encode/encodeValidate/makefile 1.19
1.19 2010/05/28 19:43:41 krish
fixed bug where BAM validator was breaking the cell CV term validator
Index: src/hg/encode/encodeValidate/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/encodeValidate/makefile,v
retrieving revision 1.18
retrieving revision 1.19
diff -b -B -U 1000000 -r1.18 -r1.19
--- src/hg/encode/encodeValidate/makefile 29 Aug 2009 18:05:22 -0000 1.18
+++ src/hg/encode/encodeValidate/makefile 28 May 2010 19:43:41 -0000 1.19
@@ -1,61 +1,62 @@
# Build encode validator
include ../../../inc/common.mk
SCRIPT_FILES = \
doEncodeValidate.pl
CONFIG_FILES = \
fields.ra \
labs.ra \
cv.ra \
- hg18_chromInfo.txt
+ hg18_chromInfo.txt \
+ expVars.ra
CV = cv.ra
PIPELINE_PATH=/hive/groups/encode/dcc/pipeline
CONFIG_DIR = ${PIPELINE_PATH}/${PIPELINE_DIR}/config
all:
@${MAKE} --no-print-directory SCRIPTS=${HOME}/bin/scripts PIPELINE_DIR=encpipeline_${USER} scripts config cgi
alpha:
@${MAKE} --no-print-directory SCRIPTS=${SCRIPTS} PIPELINE_DIR=encpipeline_beta scripts config install-cgi
install:
@${MAKE} --no-print-directory SCRIPTS=${ENCODE_PIPELINE_BIN} PIPELINE_DIR=encpipeline_prod scripts config install-cgi
# recursive targets, arguments:
# SCRIPTS PIPELINE_DIR
scripts: ${SCRIPT_FILES:%=${SCRIPTS}/%}
${SCRIPTS}/%: %
@mkdir -p $(dir $@)
chmod +x $<
perl -c $< 2>&1
cp -p $< $@.tmp
mv -f $@.tmp $@
config: ${CONFIG_FILES:%=${CONFIG_DIR}/%}
install-cgi:
@if [ ! -d "${CGI_BIN}/encode" ]; then \
${MKDIR} ${CGI_BIN}/encode; \
fi
rm -f ${CGI_BIN}/encode/${CV}
cp -p config/${CV} ${CGI_BIN}/encode/${CV}
cgi:
@if [ ! -d "${CGI_BIN}-${USER}/encode" ]; then \
${MKDIR} ${CGI_BIN}-${USER}/encode; \
fi
rm -f ${CGI_BIN}-${USER}/encode/${CV}
cp -p config/${CV} ${CGI_BIN}-${USER}/encode/${CV}
${CONFIG_DIR}/%: config/%
@mkdir -p $(dir $@)
cp -p $< $@.tmp
mv -f $@.tmp $@
test:
cd test && ${MAKE}