src/hg/hgGetAnn/tests/makefile 1.4

Index: src/hg/hgGetAnn/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgGetAnn/tests/makefile,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/hg/hgGetAnn/tests/makefile	6 Aug 2004 03:07:33 -0000	1.3
+++ src/hg/hgGetAnn/tests/makefile	25 May 2010 21:17:28 -0000	1.4
@@ -1,82 +1,82 @@
 include ../../../inc/common.mk
 
 # use hg15 to avoid incremental update
 DB=hg15
 
 all:
 
 test: chrRangeTests textTests
 
 ###
 # chrom range queries
 ###
 CHR_RANGE = chr5:112,253,464-112,324,832
 
 chrRangeTests: chrRangeGenePred chrRangePsl chrRangePslSplit chrRangePslKeepBin \
 	chrRangeGenePredColHeaders chrRangeGenePredTsvHeaders
 
 # range genePred
 chrRangeGenePred: mkdirs
 	hgGetAnn ${DB} refGene ${CHR_RANGE} output/$@.gp
 	diff expected/$@.gp output/$@.gp
 
 # range psl single
 chrRangePsl: mkdirs
 	hgGetAnn ${DB} refSeqAli ${CHR_RANGE} output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 # range psl split
 chrRangePslSplit: mkdirs
 	hgGetAnn ${DB} intronEst chr4:56,225,976-56,230,912 output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 # range psl keep bin, include spaces in query
 chrRangePslKeepBin: mkdirs
-	hgGetAnn -keepBin ${DB} mrna "chr5 112272300 112280228" output/$@.psl
+	hgGetAnn -keepBin ${DB} blatFugu "chr5 112272300 112280228" output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 # range genePred with headers
 chrRangeGenePredColHeaders: mkdirs
 	hgGetAnn -colHeaders ${DB} refGene ${CHR_RANGE} output/$@.gp
 	diff expected/$@.gp output/$@.gp
 
 # range genePred with tsv headers
 chrRangeGenePredTsvHeaders: mkdirs
 	hgGetAnn -tsvHeaders ${DB} refGene ${CHR_RANGE} output/$@.gp
 	diff expected/$@.gp output/$@.gp
 
 ###
 # acc, name and textual queries
 ###
 textTests: geneNameQuery geneAccQuery mrnaAccQuery keywordQuery multSameLoc
 
 geneNameQuery:
 	hgGetAnn ${DB} refGene CLOCK output/$@.gp
 	diff expected/$@.gp output/$@.gp
 
 # aligns in 9 places
 geneAccQuery:
 	hgGetAnn ${DB} refGene NM_005083 output/$@.gp
 	diff expected/$@.gp output/$@.gp
 
 # aligns in 10 places
 mrnaAccQuery:
 	hgGetAnn ${DB} mrna AB062075  output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 # hits multiple mRNAs
 keywordQuery::
 	hgGetAnn ${DB} mrna "breast cancer early onset" output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 # acc query were there are multiple genes with same start/stop
 multSameLoc:
 	hgGetAnn ${DB} refGene NM_005522 output/$@.gp
 	diff expected/$@.gp output/$@.gp
 
 
 clean::
 	rm -rf output
 
 mkdirs:
 	@${MKDIR} output