src/hg/lib/t2g.sql 1.1
1.1 2010/05/26 18:23:29 hiram
new version now with seqIds in t2g.sql
Index: src/hg/lib/t2g.sql
===================================================================
RCS file: src/hg/lib/t2g.sql
diff -N src/hg/lib/t2g.sql
--- /dev/null 1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/t2g.sql 26 May 2010 18:23:29 -0000 1.1
@@ -0,0 +1,19 @@
+#Text to Genome project feature table, in bed12+ format, additional field seqIds
+CREATE TABLE `t2g` (
+ `chrom` varchar(255) NOT NULL, # chromosome
+ `chromStart` int(10) unsigned NOT NULL, # start position on chromosome
+ `chromEnd` int(10) unsigned NOT NULL, # end position on chromosome
+ `name` varchar(255) NOT NULL, #name of feature
+ `score` int(10) unsigned NOT NULL, # score of feature
+ `strand` char(1) NOT NULL, # strand of feature
+ `thickStart` int(10) unsigned NOT NULL, # start of exons
+ `thickEnd` int(10) unsigned NOT NULL, #end of exons
+ `reserved` int(10) unsigned NOT NULL, # no idea
+ `blockCount` int(10) unsigned NOT NULL, # number of blocks
+ `blockSizes` longblob NOT NULL, # size of blocks
+ `chromStarts` longblob NOT NULL, # A comma-separated list of block starts
+ `seqIds` longblob NOT NULL, # comma-separated list of sequenceIds used to generate this feature, require a trailing comma at the end
+ KEY `name` (`name`(16)),
+ KEY `chrom` (`chrom`(6)),
+ KEY `chromStartAndName` (`chrom`(6), chromStart, name)
+);