hiram: changes by file

branch to review (2010-05-25 to 2010-06-01) v233

• src/makefile
  • 1.74 lines changed: 2, context: html, text, full: html, text
    may as well mkdir on scripts and destdir bindir as we start up
  • 1.73 lines changed: 2, context: html, text, full: html, text
    adding liftUp to the userApps build
• src/hg/hgc/t2g.c
  • 1.7 lines changed: 6, context: html, text, full: html, text
    update to abstract display to keep in more condensed
  • 1.6 lines changed: 55, context: html, text, full: html, text
    new version now with seqIds in t2g.sql
• src/hg/lib/t2g.sql
  • 1.1 lines changed: 19, context: html, text, full: html, text
    new version now with seqIds in t2g.sql
• src/hg/lib/t2gArticle.sql
  • 1.2 lines changed: 3, context: html, text, full: html, text
    new version now with seqIds in t2g.sql
• src/hg/lib/t2gSequence.sql
  • 1.2 lines changed: 3, context: html, text, full: html, text
    new version now with seqIds in t2g.sql
• src/hg/lib/wikiTrack.c
  • 1.29 lines changed: 3, context: html, text, full: html, text
    show wiki track even if not logged in
  • 1.28 lines changed: 1, context: html, text, full: html, text
    fixup target blank for itemUrl om hgc wiki item click URL
• src/hg/liftUp/makefile
  • 1.11 lines changed: 6, context: html, text, full: html, text
    allow DESTDIR to be used
• src/hg/makeDb/doc/makeEnsembl.txt
  • 1.19 lines changed: 877, context: html, text, full: html, text
    all v58 build sequences done
  • 1.18 lines changed: 71, context: html, text, full: html, text
    bosTau4 and gasAcu1 problems taken care of for v58 update
  • 1.17 lines changed: 116, context: html, text, full: html, text
    v58 done for hg19,mm9,rn4
• src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra
  • 1.12 lines changed: 5, context: html, text, full: html, text
    add search on bacEnds table
  • 1.11 lines changed: 7, context: html, text, full: html, text
    adding bac end track
• src/hg/utils/automation/EnsGeneAutomate.pm
  • 1.24 lines changed: 168, context: html, text, full: html, text
    adding version 58 to the listings
• src/hg/utils/automation/makefile
  • 1.15 lines changed: 1, context: html, text, full: html, text
    need to mkdir scripts
• src/inc/common.mk
  • 1.80 lines changed: 1, context: html, text, full: html, text
    SCRIPTS is now HOME/bin/scripts not /cluster/bin/scripts