tdreszer: changes by file

branch to review (2010-05-25 to 2010-06-01) v233

• src/hg/encode/DAFs/2.0/renMm9Tfbs.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Validate atleast 1000 on fastqs. I am not 'quick' works on fastq.
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Minor touch-ups
• src/hg/encode/DAFs/2.0/renSample.ddf
  • 1.3 lines changed: 6, context: html, text, full: html, text
    Minor touch-ups
  • 1.2 lines changed: 6, context: html, text, full: html, text
    Make sure therre are tabls and dummy up one experiment
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.227 lines changed: 12, context: html, text, full: html, text
    At Venkat's urging, added useful comment to trackDb entry with subId
  • 1.226 lines changed: 21, context: html, text, full: html, text
    Added origAssembly metadata term. Moved metadata lines from trackDb.ra and fileDb.ra to mdb.txt
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.241 lines changed: 20, context: html, text, full: html, text
    A lot of 'organism Human' lines were missing from cells
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.32 lines changed: 5, context: html, text, full: html, text
    Added origAssembly to help distinguish hg18 to hg19 datasets.
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • 1.34 lines changed: 3, context: html, text, full: html, text
    Oops. Lost them all.
  • 1.33 lines changed: 35, context: html, text, full: html, text
    Improvements needed for passing list of terms: support control terms mixed with Antibodies
  • 1.32 lines changed: 78, context: html, text, full: html, text
    Extended to allow requesting a comma separated list of terms or tags
• src/hg/hgTracks/simpleTracks.c
  • 1.142 lines changed: 4, context: html, text, full: html, text
    Fix for memory overrun when many classes are being selected via filterBySet()
• src/hg/js/hui.js
  • 1.57 lines changed: 4, context: html, text, full: html, text
    Empty selection is invalid fro filterBy. Force it to 'All' when this case happens.
• src/hg/js/ui.dropdownchecklist.js
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Fixed bug wherre instance was referenced when it was null
  • 1.8 lines changed: 19, context: html, text, full: html, text
    Empty selection is invalid fro filterBy. Force it to 'All' when this case happens.
• src/hg/lib/hui.c
  • 1.296 lines changed: 3, context: html, text, full: html, text
    Fix for '(null)' showing up in sortColumn header
• src/hg/makeDb/doc/encodeDccHg18/haibTfsbRelease2Lists.txt
  • 1.7 lines changed: 45, context: html, text, full: html, text
    Rearranged some files due to Katrina's careful QA work
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.993 lines changed: 4785, context: html, text, full: html, text
    Split UW Histone, UW DGF and UW DNase out of trackdDb.wgEnocde.ra
  • 1.992 lines changed: 1623, context: html, text, full: html, text
    Split Broad Histone out of trackdDb.wgEnocde.ra
  • 1.991 lines changed: 2185, context: html, text, full: html, text
    Split Open Chromatin out of trackdDb.wgEnocde.ra
  • 1.990 lines changed: 2377, context: html, text, full: html, text
    Split Yale TFBS out of trackdDb.wgEnocde.ra
  • 1.989 lines changed: 3639, context: html, text, full: html, text
    Split HAIB TFBS out of trackDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.ra
  • 1.1 lines changed: 1626, context: html, text, full: html, text
    Split Broad Histone out of trackdDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.ra
  • 1.1 lines changed: 2188, context: html, text, full: html, text
    Split Open Chromatin out of trackdDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
  • 1.1 lines changed: 3188, context: html, text, full: html, text
    Split HAIB TFBS out of trackDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.ra
  • 1.1 lines changed: 457, context: html, text, full: html, text
    Split HAIB TFBS out of trackDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra
  • 1.1 lines changed: 2613, context: html, text, full: html, text
    Split UW Histone, UW DGF and UW DNase out of trackdDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.ra
  • 1.1 lines changed: 241, context: html, text, full: html, text
    Split UW Histone, UW DGF and UW DNase out of trackdDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra
  • 1.1 lines changed: 1938, context: html, text, full: html, text
    Split UW Histone, UW DGF and UW DNase out of trackdDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.ra
  • 1.1 lines changed: 2381, context: html, text, full: html, text
    Split Yale TFBS out of trackdDb.wgEnocde.ra
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleRNAseq.ra
  • 1.2 lines changed: 18, context: html, text, full: html, text
    Removed an object that didn't belong
  • 1.1 lines changed: 327, context: html, text, full: html, text
    Forgot to load Yale PolyA into the mdb earlier
• src/hg/utils/automation/Encode.pm
  • 1.66 lines changed: 1, context: html, text, full: html, text
    Added mdb.txt file for metadata lines