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UCSC Genome Browser Project Staff:
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Jim Kent: Research Scientist,
co-director of UCSC Genome Browser project.
Design and implementation of the
Genome Browser and the
BLAT
sequence search tool. Author of the
the UCSC Known Genes annotations,
the Gene Sorter,
VisiGene,
Genome Graphs, chaining
and netting programs, the In
Silico PCR tool, and the
GigAssembler.
Implementation of many Genome Browser annotation tracks,
including FPC contigs, assembly, gap, coverage,
known genes, full mRNA, spliced ESTs, human ESTs,
Genscan genes, non-human mRNA and EST, and mouse BLAT.
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Galt Barber:
Genome Browser engineering. VisiGene, Genome Graphs,
parasol, ENCODE submission pipeline.
-
Hiram Clawson:
Genome Browser engineering. New and updated organism
browsers, wiggle tracks, genomeWiki, wikiTrack,
mirror and licensing technical support, modENCODE.
-
Melissa Cline:
Genome Browser engineering. ENCODE.
-
Antonio Coelho:
Genome Browser QA, mailing list support.
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Mark Diekhans:
Technical engineering lead and PhD student. MGC project
CCDS, Genome Browser GenBank data pipeline, Gencode.
-
Tim Dreszer:
Genome Browser engineering. ENCODE, guinea pig browser.
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Pauline Fujita:
Genome Browser QA, mailing list support.
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Mary Goldman:
Genome Browser QA, mailing list support.
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Rachel Harte:
Genome Browser engineering. CCDS and MGC curation,
Zebrafish browser.
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Angie Hinrichs:
Genome Browser engineering. SNPs and variation data,
insect, chicken and dog browsers, modENCODE, Table
Browser, session management.
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Fan Hsu:
Director of Proteomics. Cancer browser projects, GSID,
Proteome Browser, Known Genes.
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Donna Karolchik:
Genome Browser project and engineering management,
documentation, web content, Genome Browser licensing,
training/outreach coordinator.
-
Robert Kuhn:
Genome Browser QA manager, project outreach, mailing
list support.
-
Katrina Learned:
Genome Browser QA, mailing list support.
-
Chin Li:
Genome Browser engineering. New and updated organism
browsers.
-
+ Venkat Malladi:
+ ENCODE data wrangler.
+
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Larry Meyer:
Genome Browser engineering. ENCODE, UI, horse browser.
-
Thomas Pringle:
Technical advisor on Proteome Browser
project, avid Genome Browser user, constant source of ideas
for improving and expanding project functionality.
-
Brian Raney:
Genome Browser engineering. ENCODE, zebra finch browser.
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Brooke Rhead:
Genome Browser QA, mailing list support.
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Kate Rosenbloom:
ENCODE DCC technical project manager and Genome Browser
engineering. ENCODE DCC and pilot projects, multiz
and conservation alignments, custom track manager.
-
- Kayla Smith:
- Genome Browser QA, mailing list support.
+ Cricket Alicia Sloan:
+ ENCODE data wrangler.
-
Vanessa Swing:
Genome Browser QA, mailing list support.
-
Ann Zweig:
Genome Browser QA Team Lead, mailing list support.
Post-docs and Graduate Students (Browser-related support):
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Robert Baertsch:
Graduate student - Synteny, pseudogenes, orthology;
Genome Browser support.
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Steve Benz:
Graduate student - Cancer genomics browser.
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Craig Lowe:
Graduate student - Contribution of transposons to the
evolution of the human genome.
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Benedict Paten:
Graduate student - ENCODE DAC, comparative genomics and
evolutionary analysis.
-
Krishna Roskin:
Graduate student - Phylogenetic analysis, Genome
Browser database support, early Table Browser support.
-
Zack Sanborn:
Graduate student - Cancer genomics browser.
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Bernard Suh:
Graduate student - Reconstruction of evolutionary
trees.
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Jing Zhu:
Post-doctoral scholar - Cancer genomics browser.
Systems Administration Staff:
Center for Biomolecular Science and Engineering
(CBSE) Staff:
We gratefully acknowledge the help of former UCSC genome
team members Gill Bejerano, Mathieu Blanchette, Trevor
Bruen, Brenna Candelaria, Mike Chalup, Chad
Chen, Ron Chao, Vege Clerisse, Jenny Draper,
Phoenix Eagleshadow, Terry Furey, Patrick Gavin,
Jennifer Jackson, Scot Kennedy, Andy Kern, Nick Littlestone,
Yontao Lu, Crystal Lynch, Jian Ma, Chester Manuel, Jakob
Pedersen,
Mike Pheasant, Andy Pohl, Katie Pollard, Ruth Rabinowitz,
- Sanja Rogic, Matt Schwartz, Chuck Sugnet,
+ Sanja Rogic, Matt Schwartz, Kayla Smith, Chuck Sugnet,
Ali Sultan-Qurraie, Adam Siepel, Paul Tatarksy,
Archana Thakkapallayil, Daryl Thomas, Aaron Tomb,
Heather Trumbower, Sandra Walton, Ting Wang,
Ryan Weber, Wei Wu, Matt Xia, Chen-Hsiang Yeang, and Degui
Zhi.
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