00c71efb64cfab9e7f77f030724df1b161e5b6b3 donnak Thu Jun 17 14:40:52 2010 -0700 Added link to Grisham tutorial, fixed some capitalization for consistency. diff --git src/hg/htdocs/training.html src/hg/htdocs/training.html index cc72a80..b749786 100755 --- src/hg/htdocs/training.html +++ src/hg/htdocs/training.html @@ -1,83 +1,89 @@ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> <HTML> <HEAD> <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> <META http-equiv="Content-Script-Type" content="text/javascript"> <META name="description" content="UCSC Genome Browser FAQ"> <META name="keywords" content="genome, genome browser, genome assembly, UCSC, bioinformatics, sequence, gene prediction, SNP, EST, mRNA"> <TITLE>UCSC Genome Bioinformatics: Training</TITLE> <LINK REL="STYLESHEET" HREF="style/HGStyle.css"> </HEAD> <BODY BGCOLOR="FFF9D2" LINK="0000CC" VLINK="#330066" ALINK="#330066"> <A NAME="TOP"></A> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"><TR><TH COLSPAN=2 ALIGN="left"><IMG SRC="../images/title.jpg" ALT="UCSC Genome Bioinformatics"></TH></TR> <TR><TD COLSPAN=2 HEIGHT=40><!--#include virtual="/inc/FAQ.topbar.html"--></TD></TR> <!--Content Tables-------------------------------------------------------> <TR><TD COLSPAN=2 CELLPADDING=10> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"><TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"><TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="../images/hr.gif" WIDTH=100%> <TR><TD> <FONT SIZE="4"><b> Getting Help with the UCSC Genome Browser</b></FONT> </TD></TR></TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0><TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0><TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=5> </TD><TD> <B>On-line Training and Tutorials:</B> <UL> <LI><A HREF="http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml" TARGET=_blank>Open Helix tutorial and training materials</A> - <LI><A HREF="goldenPath/help/ucscGeneFishing.pdf">Fishing for Genes in the UCSC Browser (pdf)</A> + <LI><A HREF="goldenPath/help/ucscGeneFishing.pdf">Fishing for genes in the UCSC Browser (pdf)</A> <LI><A HREF="http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6WG1-4SN8V4K-1-8&_cdi=6809&_user=10&_orig=search&_coverDate=08%2F31%2F2008&_sk=999079997&view=c&wchp=dGLzVlz-zSkzk&md5=5be629f1062668e09216dd73510cd45c&ie=/sdarticle.pdf" TARGET = _BLANK>UCSC genome browser tutorial (pdf)</A> <LI><A HREF="training/ashg2009" >Step-by-step tutorial presented at ASHG 2009 annual meeting</A> - basic browser navigation and functionality in the context of interpreting clinical genetics reports. <LI><A HREF="http://genomewiki.ucsc.edu/index.php/ABRF2010_Tutorial" >Step-by-step tutorial presented at ABRF 2010 annual meeting</A> - how to convert files and display high-throughput sequencing results. + <LI><A HREF="http://www.lifescied.org/cgi/content/full/9/2/98" + TARGET=_blank>Teaching bioinformatics and neuroinformatics by + using free web-based tools</A> - student-level tutorial that + demonstrates the combined use of several major bioinformatic tools + (including the UCSC Genome Browser) in answering a series of + related research questions </UL> <B>User's Guides for Tools in the Genome Browser:</B> <UL> <LI><A HREF="../goldenPath/help/hgTracksHelp.html">Genome Browser User's Guide</A> <LI><A HREF="../goldenPath/help/hgTablesHelp.html">Table Browser User's Guide</A> <LI><A HREF="../goldenPath/help/hgTracksHelp.html#CustomTracks">Custom Tracks User's Guide</A> <LI><A HREF="../goldenPath/help/hgGenomeHelp.html">Genome Graphs User's Guide</A> <LI><A HREF="../goldenPath/help/hgSessionHelp.html">Sessions User's Guide</A> <LI><A HREF="../goldenPath/help/hgNearHelp.html">Gene Sorter User's Guide</A> <LI><A HREF="../goldenPath/help/pbTracksHelpFiles/pbTracksHelp.shtml">Proteome Browser User's Guide</A> </UL> <B>Contacting Us and Mailing Lists:</B> <UL> <LI><A HREF="../contacts.html">Genome Browser contact information</A> <LI><A HREF="https://lists.soe.ucsc.edu/pipermail/genome/">Genome Browser mailing list archives</A> <LI><A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome">Subscribe to the Genome mailing list<A> (interactive Genome Browser discussion forum) </UL> <B>Quick Links:</B> <UL> <LI><A HREF="../index.html">Genome Browser home page</A> - <LI><A HREF="../goldenPath/stats.html">Summary Statistics</A> (human genome only) + <LI><A HREF="../goldenPath/stats.html">Summary statistics</A> (human genome only) <LI><A HREF="../goldenPath/releaseLog.html">Log of released data</A> (including annotation tracks and complete assemblies) <LI><A HREF="../goldenPath/credits.html">Software and data credits</A> </UL> <B>Mirror Sites and Source Code:</B> <UL> - <LI><A HREF="../mirror.html">Genome Browser Mirror Sites</A> - <LI><A HREF="../FAQ/FAQlicense.html#license3">Obtaining the Genome Browser Source Code</A> + <LI><A HREF="../mirror.html">Genome Browser mirror sites</A> + <LI><A HREF="../FAQ/FAQlicense.html#license3">Obtaining the Genome Browser source code</A> </UL> <B>Associated Publications and Documents:</B> <UL> <LI><A HREF="../goldenPath/pubs.html">UCSC Genome Bioinformatics Group publications</A> <LI><A HREF="../goldenPath/newsarch.html">News archives</A> </UL> </TD></TR></TABLE> </TD><TD WIDTH=15></TD></TR></TABLE> <br></TD></TR></TABLE> </TD></TR></TABLE> </TD></TR></TABLE> </BODY></HTML>