Commits for galt

v234_preview to v234_base (2010-06-15 to 2010-06-22) v234

• Merge branch 'master' of hgwdev:/data/git/kent
• "New version number v234"
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
• some reports
  • src/utils/qa/weeklybld/buildGitReports.csh - lines changed 1, context: html, text, full: html, text
• convert to git
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 10, context: html, text, full: html, text
• v234 final build
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• "Encode release log update"
  • src/hg/htdocs/ENCODE/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Release log update"
  • src/hg/htdocs/goldenPath/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Encode release log update"
  • src/hg/htdocs/ENCODE/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Release log update"
  • src/hg/htdocs/goldenPath/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Encode release log update"
  • src/hg/htdocs/ENCODE/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Release log update"
  • src/hg/htdocs/goldenPath/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Encode release log update"
  • src/hg/htdocs/ENCODE/releaseLog.html - lines changed 1, context: html, text, full: html, text
• "Release log update"
  • src/hg/htdocs/goldenPath/releaseLog.html - lines changed 1, context: html, text, full: html, text
• Merge commit 'origin/master' into fix
• combining Jims 2 commits into one. Making hgTrackRender and Rearranging things
  • src/hg/hgTracks/hgTracks.c - lines changed 101, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 18, context: html, text, full: html, text
  • src/hg/hgTracks/mainMain.c - lines changed 78, context: html, text, full: html, text
  • src/hg/hgTracks/makefile - lines changed 14, context: html, text, full: html, text
  • src/hg/hgTracks/renderMain.c - lines changed 105, context: html, text, full: html, text
• "Encode release log update"
  • src/hg/htdocs/ENCODE/releaseLog.html - lines changed 15, context: html, text, full: html, text
• "Release log update"
  • src/hg/htdocs/goldenPath/releaseLog.html - lines changed 15, context: html, text, full: html, text
• adding bigWigToWig and wigCorrelate to the utils built for hgdownload
  • src/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/bigWigToWig/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/wigCorrelate/makefile - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of galt@hgwdev.cse.ucsc.edu:/data/git/kent
• adding install target
  • src/utils/git-reports/makefile - lines changed 2, context: html, text, full: html, text
• Merge /cluster/home/galt/git-reports-integrate
• moving files to new home under kent
  • git-reports.c - lines changed 848, context: html, text, full: html, text
  • makefile - lines changed 27, context: html, text, full: html, text
  • src/utils/git-reports/git-reports.c - lines changed 848, context: html, text, full: html, text
  • src/utils/git-reports/makefile - lines changed 27, context: html, text, full: html, text
• fix relative path in makefile for integration
  • makefile - lines changed 2, context: html, text, full: html, text
• getting ready to integrate into kent source
  • makefile - lines changed 31, context: html, text, full: html, text
• making author use email account name by request
  • git-reports.c - lines changed 13, context: html, text, full: html, text
  • makefile - lines changed 2, context: html, text, full: html, text
• adding phastConsElements html description page
  • src/hg/makeDb/doc/danRer6.txt - lines changed 5, context: html, text, full: html, text
• adding description page for danRer6 phastCons6way
  • src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of hgwdev:/data/git/kent
• fix hardwired old test symbol
  • src/utils/qa/weeklybld/tagBeta.csh - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of galt@hgwdev.cse.ucsc.edu:/data/git/kent
• removing mistaken file, Cricket confirms is just a dupe anyway
  • src/hg/encode/DAFs/2.0/:n - lines changed 53, context: html, text, full: html, text
• convert to git
  • src/utils/qa/weeklybld/doNewReview.csh - lines changed 7, context: html, text, full: html, text
• getting rid of the last of cvs in paths
  • src/utils/qa/weeklybld/buildGitReports.csh - lines changed 16, context: html, text, full: html, text
• oops need root in path
  • src/utils/qa/weeklybld/buildGitReports.csh - lines changed 4, context: html, text, full: html, text
• tags are global so do not get automatic origin/ prefix
  • git-reports.c - lines changed 1, context: html, text, full: html, text
  • makefile - lines changed 1, context: html, text, full: html, text
• making buildGitReports.csh shell to setup and run git-reports
  • src/utils/qa/weeklybld/buildGitReports.csh - lines changed 150, context: html, text, full: html, text
• do not need CVS_REPORTS_WORKDIR variable
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 1, context: html, text, full: html, text
• fixed tiny bug - added check that h output file was actually open
  • git-reports.c - lines changed 1, context: html, text, full: html, text
• shorthand git is simpler
  • git-reports.c - lines changed 4, context: html, text, full: html, text
• fixing end-li tag
  • git-reports.c - lines changed 1, context: html, text, full: html, text
• removed redundancy in html generation, and in mkdir, tidied up tags a bit for consistency
  • git-reports.c - lines changed 88, context: html, text, full: html, text
• added error checking for system() call, removed some uglyf prints, cleaned up some comments
  • git-reports.c - lines changed 28, context: html, text, full: html, text
• suppress commitIds as too-much-info, add UL/LI tags to allow text to wrap, htmlEncode the commit-comment, also substitute <br> for newlines in comment
  • git-reports.c - lines changed 38, context: html, text, full: html, text
• added a copyright and my name and MarkDs name
  • git-reports.c - lines changed 8, context: html, text, full: html, text
• fixing link formatting regarding position of pre-tag section
  • git-reports.c - lines changed 9, context: html, text, full: html, text
• fixing makefile
  • makefile - lines changed 3, context: html, text, full: html, text
• fixed bug with calling makeDiffAndSplit in wrong loopfixed tempfilename in case multiple users run it at same time
  added main index page
  made titles and headers consistent
  removed sed to clean weird unwanted context lines saving 20 seconds
  
  • git-reports.c - lines changed 82, context: html, text, full: html, text
  • makefile - lines changed 1, context: html, text, full: html, text
• changed from git show to git diff to have more control over output options like suppressing whitespace. Also in order to get the diff for a deleted file, I had to change it to dump the entire diff for the commit and then parse it into parts
  • git-reports.c - lines changed 107, context: html, text, full: html, text
  • makefile - lines changed 1, context: html, text, full: html, text
• getting rid of word Git in title
  • git-reports.c - lines changed 2, context: html, text, full: html, text
• adding all-files view
  • git-reports.c - lines changed 42, context: html, text, full: html, text
• added bottom navigation links to files and commits views
  • git-reports.c - lines changed 2, context: html, text, full: html, text
• added navigation links to files and commits views
  • git-reports.c - lines changed 2, context: html, text, full: html, text
• added files view for user
  • git-reports.c - lines changed 148, context: html, text, full: html, text
• adding commitNumber for fileview sorting
  • git-reports.c - lines changed 3, context: html, text, full: html, text
• fixed colors, fixed counts on new files when there is no context line to finish the block, fixed bug in output of git show in diff part where odd and variable extra context appeared after @@ .* @@, currently just using sed to trim the diff file so html file inherits automatically
  • git-reports.c - lines changed 42, context: html, text, full: html, text
• added users-page
  • git-reports.c - lines changed 33, context: html, text, full: html, text
• add counts for lines and files changed for user and grand total
  • git-reports.c - lines changed 19, context: html, text, full: html, text
• fixed bugs in output paths, added htmlEncode
  • git-reports.c - lines changed 100, context: html, text, full: html, text
• adding linesChanged
  • git-reports.c - lines changed 32, context: html, text, full: html, text
• adding html processing
  • git-reports.c - lines changed 48, context: html, text, full: html, text
• fixed bugs, got diffs working
  • git-reports.c - lines changed 87, context: html, text, full: html, text
  • makefile - lines changed 2, context: html, text, full: html, text
• mkdir more various subdir levels needed
  • git-reports.c - lines changed 12, context: html, text, full: html, text
• mkdir various subdir levels needed
  • git-reports.c - lines changed 16, context: html, text, full: html, text
• mkdir outPrefix in case
  • git-reports.c - lines changed 7, context: html, text, full: html, text
• adding outPrefix to dir or url
  • git-reports.c - lines changed 6, context: html, text, full: html, text
• using slNameSort
  • git-reports.c - lines changed 7, context: html, text, full: html, text
• adding userHash and users list
  • git-reports.c - lines changed 26, context: html, text, full: html, text
• add parsing for main commits list from startTag to endTag
  • git-reports.c - lines changed 97, context: html, text, full: html, text
• initial commit of git-reports
  • git-reports.c - lines changed 96, context: html, text, full: html, text
  • makefile - lines changed 39, context: html, text, full: html, text