File Changes for hiram

v234_preview to v234_base (2010-06-15 to 2010-06-22) v234

• src/ai/paraFlow/aceTools/makefile
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• src/ai/paraFlow/compiler/makefile
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• src/ai/paraFlow/runAsm/makefile
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• src/ai/paraFlow/runtime/makefile
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• src/blat/test/makefile
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• src/blatTheory/makefile
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• src/cbAli/makefile
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• src/cdnaAli/ali2alx/makefile
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• src/cdnaAli/aliGlue/makefile
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• src/cdnaAli/binGood/makefile
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• src/cdnaAli/cdnaOff/makefile
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• src/cdnaAli/cluster/makefile
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• src/cdnaAli/exonAli/makefile
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• src/cdnaAli/findCdna/makefile
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• src/cdnaAli/lib/makefile
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• src/cdnaAli/pairClo/makefile
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• src/cdnaAli/patCount/makefile
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• src/cdnaAli/patSpace/makefile
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• src/cdnaAli/refineAli/makefile
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• src/cdnaAli/sortFilt/makefile
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• src/cdnaAli/stitchea/makefile
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• src/fuzzyFind/makefile
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• src/gfClient/makefile
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• src/gfServer/makefile
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• src/hg/affyTransciptome/makefile
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• src/hg/agpAllToFaFile/makefile
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• src/hg/agpCloneCheck/makefile
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• src/hg/agpCloneList/makefile
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• src/hg/agpToGl/makefile
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• src/hg/altGraph/makefile
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• src/hg/altSplice/affySplice/makefile
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• src/hg/altSplice/axtCountBeds/makefile
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• src/hg/altSplice/spliceWalk/makefile
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• src/hg/autoXml/t/makefile
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• src/hg/bedIntersect/makefile
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• src/hg/bedOverlap/makefile
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• src/hg/bedToGenePred/makefile
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• src/hg/bioImage/hgBioImage/makefile
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• src/hg/borfBig/makefile
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• src/hg/cgiExample/makefile
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• src/hg/checkHgFindSpec/makefile
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• src/hg/chimpStuff/chimpChromContigAgp/makefile
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• src/hg/chimpStuff/chimpHiQualDiffs/makefile
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• src/hg/chimpStuff/chimpSuperQuals/makefile
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• src/hg/ctgFaToFa/makefile
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• src/hg/ctgToChromFa/makefile
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• src/hg/encode/encodeDownloadsPage/makefile
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• src/hg/encode/encodeLoad/makefile
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• src/hg/encode/encodeMkChangeNotes/makefile
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• src/hg/encode/encodeStatus/makefile
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• src/hg/encode/encodeValidate/makefile
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• src/hg/encode/hgEncodeDataVersions/makefile
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• src/hg/encode/hgEncodeVocab/makefile
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• src/hg/encode/ldGencodeIntron/makefile
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• src/hg/encode/makefile
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• src/hg/encode/regionAgp/makefile
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• src/hg/encode/regionOrtho/makefile
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• src/hg/fakeFinContigs/makefile
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• src/hg/fakeOut/makefile
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• src/hg/ffaToFa/makefile
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• src/hg/fqToQa/makefile
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• src/hg/fqToQac/makefile
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• src/hg/fragPart/makefile
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• src/hg/gbGetEntries/tests/makefile
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• src/hg/gbOneAcc/makefile
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• src/hg/geneBounds/assessLibs/makefile
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• src/hg/geneBounds/averagExp/makefile
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• src/hg/geneBounds/axtForEst/makefile
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• src/hg/geneBounds/bedCons/makefile
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• src/hg/geneBounds/bedThickToCds/makefile
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• src/hg/geneBounds/checkableBorf/makefile
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• src/hg/geneBounds/clusterPsl/makefile
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• src/hg/geneBounds/clusterRna/makefile
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• src/hg/geneBounds/dnaMotifFind/makefile
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• src/hg/geneBounds/eisenInput/makefile
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• src/hg/geneBounds/emblMatrixToMotif/makefile
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• src/hg/geneBounds/estLibStats/makefile
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• src/hg/geneBounds/expToRna/makefile
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• src/hg/geneBounds/iriToControlTable/makefile
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• src/hg/geneBounds/iriToDnaMotif/makefile
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• src/hg/geneBounds/lib/makefile
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• src/hg/geneBounds/liftPromoHits/makefile
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• src/hg/geneBounds/makefile
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• src/hg/geneBounds/motifLogo/makefile
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• src/hg/geneBounds/motifSig/makefile
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• src/hg/geneBounds/orf/makefile
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• src/hg/geneBounds/orfCompare/makefile
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• src/hg/geneBounds/orfEnum/makefile
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• src/hg/geneBounds/orfStats/makefile
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• src/hg/geneBounds/polyInfo/makefile
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• src/hg/geneBounds/promoSeqFromCluster/makefile
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• src/hg/geneBounds/raToCds/makefile
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• src/hg/geneBounds/twinOrf/makefile
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• src/hg/geneBounds/twinOrf2/makefile
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• src/hg/geneBounds/twinOrf3/makefile
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• src/hg/geneBounds/twinOrfStats/makefile
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• src/hg/geneBounds/twinOrfStats2/makefile
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• src/hg/geneBounds/twinOrfStats3/makefile
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• src/hg/genePredCheck/makefile
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• src/hg/genePredHisto/makefile
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• src/hg/genePredToFakePsl/makefile
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• src/hg/getRna/makefile
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• src/hg/getRnaPred/makefile
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• src/hg/gigAssembler/barger/makefile
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• src/hg/gigAssembler/conJobs/cdnaOnOoJobs/makefile
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• src/hg/gigAssembler/conJobs/pslGenoJobs/makefile
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• src/hg/gigAssembler/conJobs/pslOoJobs/makefile
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• src/hg/gigAssembler/conJobs/pslSelfJobs/makefile
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• src/hg/gigAssembler/conJobs/repMaskJobs/makefile
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• src/hg/gigAssembler/conJobs/rmskOoJobs/makefile
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• src/hg/gigAssembler/g2gOverlap/makefile
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• src/hg/gigAssembler/g2gSeqOverlap/makefile
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• src/hg/gigAssembler/gapper/makefile
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