File Changes for braney

origin/v233_branch to v234_preview (2010-06-07 to 2010-06-15) v234

• src/hg/encode/DAFs/2.0/caltechRnaSeq.daf
  • lines changed 59, context: html, text, full: html, text
    update for hg19
• src/hg/encode/DAFs/2.0/haibMethylRrbs.daf
  • lines changed 2, context: html, text, full: html, text
    change validationSettings
  • lines changed 2, context: html, text, full: html, text
    add treatment and growthProtocol
• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 31, context: html, text, full: html, text
    some little fixups
• src/hg/makeDb/doc/encodeDccHg18/wgEncodeCaltechRnaSeq.release2.notes.txt
  • lines changed 4, context: html, text, full: html, text
    fixed problems with different files. Turns out that both of the release2 files were truncated. Hmm... disk exhaustion?
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 55, context: html, text, full: html, text
    take out wgEncodeBuOrchid
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra
  • lines changed 1, context: html, text, full: html, text
    fix labels
  • lines changed 55, context: html, text, full: html, text
    split out into its own include file
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html
  • lines changed 9, context: html, text, full: html, text
    add some text about the Plus and Minus Raw Signal views
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 143, context: html, text, full: html, text
    change default view to include all of the K562 and GM12878 tracks
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html
  • lines changed 1, context: html, text, full: html, text
    fix contact email address
• src/inc/linefile.h
  • lines changed 4, context: html, text, full: html, text
    add a function to remove initial browser and track lines
• src/lib/bbiWrite.c
  • lines changed 3, context: html, text, full: html, text
    skip browser and track lines at the begining of bedGraphs and wigs when creating bigWigs (added function in linefile to do this)
• src/lib/bwgCreate.c
  • lines changed 11, context: html, text, full: html, text
    skip browser and track lines at the begining of bedGraphs and wigs when creating bigWigs (added function in linefile to do this)
• src/lib/linefile.c
  • lines changed 17, context: html, text, full: html, text
    skip browser and track lines at the begining of bedGraphs and wigs when creating bigWigs (added function in linefile to do this)
• src/utils/bedGraphToBigWig/bedGraphToBigWig.c
  • lines changed 11, context: html, text, full: html, text
    skip browser and track lines at the beginning of a bedGraph. Add better error message