866f79735a27913d02243928a6a9394c78bdac0a
markd
  Mon Jun 7 20:37:09 2010 +0000
moved training
diff --git src/hg/htdocs/makefile src/hg/htdocs/makefile
index 7c390c0..6048444 100644
--- src/hg/htdocs/makefile
+++ src/hg/htdocs/makefile
@@ -1,81 +1,78 @@
 HTDOCS=/usr/local/apache/htdocs
 HTDOCS_USER=${HTDOCS}-${USER}
 
 # NOTES:
 #  - much of this is current repeats in the hgdownload htdocs makefile
 #  - all symlinks are built by the doSymLink target
 
 
 CVS = cvs
 CVSUP = ${CVS} -q update -d -P
 
 user:
 	${CVSUP}
 	${MAKE} doInstall destDir=${HTDOCS_USER} extra=doSymLink
 
 alpha:
 	${CVSUP}
 	${MAKE} doInstall destDir=${HTDOCS} extra=doSymLink
 
 beta:
 	${CVSUP}
 	${MAKE} doInstall destDir=${HTDOCS} extra=doSymLink
 
 alphaCancerPublic:
 	${CVSUP} cancerGenomics index.html
 	${MAKE} doInstallCancerPublic destDir=${HTDOCS} extra=doSymLink
 
 alphaCancerSU2C:
 	${CVSUP} cancerGenomics index.html
 	${MAKE} doInstallCancerSU2C destDir=${HTDOCS} extra=doSymLink
 
 alphaCancerTCGA:
 	${CVSUP} cancerGenomics index.html
 	${MAKE} doInstallCancerTCGA destDir=${HTDOCS} extra=doSymLink
 
 # Recursive target to do install to destDir, with extra excludes excl and
 # specific includes in incl.  The variable extra are extra targets to depend
 # on.  This queries CVS to find out the list of files to install, so avoid the
 # usual crud that collects in directories.
 doInstall: doRsync ${extra}
 
 doInstallCancerPublic: doRsync ${extra}
 	mv ${destDir}/index.html ${destDir}/index.html.org
 	ln -sf ${destDir}/cancerGenomics/index.cancerGenomics.html ${destDir}/index.html
 	mv index.html index.html.org
 
 doInstallCancerSU2C: doRsync ${extra}
 	mv ${destDir}/index.html ${destDir}/index.html.org
 	ln -sf ${destDir}/cancerGenomics/index.cancerGenomics.su2c.html ${destDir}/index.html
 	mv index.html index.html.org
 
 doInstallCancerTCGA: doRsync ${extra}
 	mv ${destDir}/index.html ${destDir}/index.html.org
 	ln -sf ${destDir}/cancerGenomics/index.cancerGenomics.tcga.html ${destDir}/index.html
 	mv index.html index.html.org
 
 # Run rsync.  Care is taking to preserve times and mode on files.  rsync is
 # smart about recreating file under the current users so that times and
 # permissions maybe modified.  However, problems happen when a directory
 # is not owned by the current users.  These options attemp to work around it.
 # use care in changing
 rsyncOpts = --times --recursive --executability --omit-dir-times --relative --cvs-exclude --exclude='makefile'
 doRsync:
 	umask 002; rsync ${rsyncOpts} ${excl} ${incl} `cvsFiles` ${destDir}
 
 # build symbolic links
 doSymLink: doRsync
 	ln -sfn ../trash ${destDir}/trash
 	ln -sfn goldenPath ${destDir}/goldenpath
 	ln -sfn /gbdb/visiGene ${destDir}/visiGene
 	ln -sfn ENCODE ${destDir}/encode
 	ln -sfn Branchiostoma_lanceolatum.jpg ${destDir}/images/Branchiostoma_floridae.jpg
 	ln -sfn Rhesus_macaque.jpg ${destDir}/images/Macaca_mulatta.jpg
 	mkdir -p ${destDir}/RNA-img
 	ln -sfn /gbdb/hg18/RNA-img ${destDir}/RNA-img/hg18
 	ln -sfn /gbdb/hg19/RNA-img ${destDir}/RNA-img/hg19
 	ln -sfn /gbdb/mm9/RNA-img  ${destDir}/RNA-img/mm9
 	ln -sfn /gbdb/rn4/RNA-img  ${destDir}/RNA-img/rn4
-	ln -sfn pubs/cauldron ${destDir}/cauldron
-	ln -sfn pubs/ancestors ${destDir}/ancestors
-	ln -sfn training/ABRF2010 ${destDir}/ABRF2010