All File Changes
v234_base to v235_preview (2010-06-22 to 2010-06-29) v235
- .gitignore
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ignore ~ files created by gedit and other programs
- src/README
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chmod -x and file name correction to README.local.git.source
- src/hg/encode/DAFs/2.0/licrMm9Histone.daf
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Updated LICR MM9 Dafs to be consistent with other mouse DAFS
- src/hg/encode/DAFs/2.0/licrMm9Tfbs.daf
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Updated LICR MM9 Dafs to be consistent with other mouse DAFS
- src/hg/encode/DAFs/2.0/psuMm95c.daf
- lines changed 30, context: html, text, full: html, text
Initial drafts of MM9, Haridson grant (PSU) Dafs (4 DataType, 5 Dafs)
- src/hg/encode/DAFs/2.0/psuMm9DnaseSeq.daf
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Initial drafts of MM9, Haridson grant (PSU) Dafs (4 DataType, 5 Dafs)
- src/hg/encode/DAFs/2.0/psuMm9Histone.daf
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Initial drafts of MM9, Haridson grant (PSU) Dafs (4 DataType, 5 Dafs)
- src/hg/encode/DAFs/2.0/psuMm9RnaSeq.daf
- lines changed 124, context: html, text, full: html, text
Initial drafts of MM9, Haridson grant (PSU) Dafs (4 DataType, 5 Dafs)
- src/hg/encode/DAFs/2.0/psuMm9Tfbs.daf
- lines changed 39, context: html, text, full: html, text
Initial drafts of MM9, Haridson grant (PSU) Dafs (4 DataType, 5 Dafs)
- src/hg/encode/DAFs/2.0/stanfordMm9Hist.daf
- lines changed 4, context: html, text, full: html, text
Updated Stanfor/Yale MM9 Dafs to be consistent with other mouse DAFS
- src/hg/encode/DAFs/2.0/stanfordMm9Tfbs.daf
- lines changed 3, context: html, text, full: html, text
Updated Stanfor/Yale MM9 Dafs to be consistent with other mouse DAFS
- src/hg/encode/DAFs/2.0/stanfordMm9TfbsInput.daf
- lines changed 4, context: html, text, full: html, text
Updated Stanfor/Yale MM9 Dafs to be consistent with other mouse DAFS
- src/hg/encode/encodeMergeReplicates/encodeMergeReplicates.c
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Improving readability by adding comments and moving a few lines around in response to Brian's review.
- src/hg/encode/encodeMergeReplicatesBatch/encodeMergeReplicatesBatch.c
- lines changed 207, context: html, text, full: html, text
Working on program that will set up batch file to merge replicates.
- src/hg/encode/encodeMergeReplicatesBatch/expected.ra
- lines changed 410, context: html, text, full: html, text
Working on program that will set up batch file to merge replicates.
- src/hg/encode/encodeMergeReplicatesBatch/expected.sh
- lines changed 83, context: html, text, full: html, text
Working on program that will set up batch file to merge replicates.
- src/hg/encode/encodeMergeReplicatesBatch/makefile
- lines changed 23, context: html, text, full: html, text
Working on program that will set up batch file to merge replicates.
- src/hg/encode/encodeMergeReplicatesBatch/test.in
- lines changed 972, context: html, text, full: html, text
Working on program that will set up batch file to merge replicates.
- src/hg/encode/encodePatchTdb/encodePatchTdb.c
- lines changed 50, context: html, text, full: html, text
Changes to allow viewInTheMiddle template trackDb files to be patched in properly
- src/hg/encode/encodeStatus/hgShowEncodeSubmissions
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Link to composite should be db aware
- src/hg/encode/encodeValidate/config/cv.ra
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A few more minor fixes from Katrina
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incorporating feedback from Katrina and from review
- lines changed 20, context: html, text, full: html, text
Filled out details for 2 antibodies for Broad
- src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
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doubling download timeout to 20 hours
- src/hg/hgApi/hgApi.c
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Added hgsqlProfile to support connecting to dbs using the profile name
- src/hg/hgGene/hgGeneData/C_elegans/ce6/otherOrgs.ra
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Rebuilt BlastTab tables of rn4 and ce6 to correct hgGene other org problems.
- src/hg/hgGene/hgGeneData/Rat/rn4/otherOrgs.ra
- lines changed 2, context: html, text, full: html, text
Rebuilt BlastTab tables of rn4 and ce6 to correct hgGene other org problems.
- src/hg/hgTrackUi/hgTrackUi.c
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Fixing order of subtracks of supertracks in hgTrackUi so works for both wgEncodeReg and for wgEncodeHistone....
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SuperTracks needed to be slReversed before displaying. Took opportunity to add warnBox to top of hgTrackUi as it should be.
- src/hg/hgTracks/factorSource.c
- lines changed 12, context: html, text, full: html, text
Making it so that in dense mode the darker, higher scoring, items are drawn on top of lighter items.
- src/hg/hgTracks/simpleTracks.c
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Added logic so that mapBoxHc() not be called in dense mode. This enable clicking on dense mode to switch to pack mode.
- src/hg/hgTracks/wigTrack.c
- lines changed 7, context: html, text, full: html, text
Making log transform for wig more apparent in graph, and clarifying it's really ln(x+1) rather than the log(x) you might expect.
- src/hg/hgc/peakClusters.c
- lines changed 17, context: html, text, full: html, text
Getting list of tracks that are being clustered from a database table (defined by an inputTrackTable trackDb tag) rather than trying to figure them out from the trackDb subGroup data. This fixes a problem that sometimes caused tracks that should have appeared in the details page to be missed after the HudsonAlpha data integration into the wgEncodeRegTfbs track.
- src/hg/htdocs/ENCODE/cellTypesMouse.html
- lines changed 60, context: html, text, full: html, text
adding new mouse ENCODE specific pages that will be part of the ENCODE portal
- lines changed 61, context: html, text, full: html, text
adding new cell types controlled vocab page for mouse ENCODE
- src/hg/htdocs/ENCODE/controlledVocabulary.html
- lines changed 48, context: html, text, full: html, text
adding two new pages to the ENCODE portal
- src/hg/htdocs/ENCODE/dataStandards.html
- lines changed 12, context: html, text, full: html, text
refining new ENCODE portal pages
- lines changed 71, context: html, text, full: html, text
adding two new pages to the ENCODE portal
- src/hg/htdocs/ENCODE/downloads.html
- lines changed 44, context: html, text, full: html, text
Placing 'Loc' tracks to new grouping and Genecode Genes to new Genes group
- src/hg/htdocs/ENCODE/downloadsMouse.html
- lines changed 11, context: html, text, full: html, text
adding new mouse ENCODE specific pages that will be part of the ENCODE portal
- lines changed 72, context: html, text, full: html, text
adding specific mouse downloads page in prepartion for mouse ENCODE
- src/hg/htdocs/ENCODE/otherTerms.html
- lines changed 336, context: html, text, full: html, text
refining new ENCODE portal pages
- lines changed 112, context: html, text, full: html, text
adding new page for other controlled vocabulary terms
- src/hg/htdocs/ENCODE/releaseLog.html
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"Encode release log update"
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"Encode release log update"
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"Encode release log update"
- lines changed 1, context: html, text, full: html, text
"Encode release log update"
- lines changed 1, context: html, text, full: html, text
"Encode release log update"
- lines changed 1, context: html, text, full: html, text
"Encode release log update"
- lines changed 1, context: html, text, full: html, text
"Encode release log update"
- src/hg/htdocs/admin/cvs.html
- src/hg/htdocs/admin/git.html
- src/hg/htdocs/goldenPath/pubs.html
- src/hg/htdocs/goldenPath/releaseLog.html
- src/hg/htdocs/inc/encode.home.topbar.html
- lines changed 1, context: html, text, full: html, text
changed 'Terms' in topbar of ENCODE portal to 'Data Policy'
- src/hg/htdocs/inc/encode.topbar.html
- lines changed 1, context: html, text, full: html, text
changed 'Terms' in topbar of ENCODE portal to 'Data Policy'
- src/hg/inc/mdb.h
- lines changed 4, context: html, text, full: html, text
Added special features to mdbPrint to print SQL insert statements for expTable and spacial case extension for adding expIds to exisiting mdb objects.
- src/hg/inc/sqlProg.h
- lines changed 7, context: html, text, full: html, text
Added hgsqlProfile to support connecting to dbs using the profile name
- src/hg/lib/clusterInputTrackTable.as
- lines changed 2, context: html, text, full: html, text
Defining a new table type for benefit of factorSource type tracks.
- lines changed 6, context: html, text, full: html, text
Adding clusterInputTrackTable.as and sql file to support regulatory cluster tracks.
- src/hg/lib/clusterInputTrackTable.sql
- lines changed 4, context: html, text, full: html, text
Defining a new table type for benefit of factorSource type tracks.
- lines changed 14, context: html, text, full: html, text
Adding clusterInputTrackTable.as and sql file to support regulatory cluster tracks.
- src/hg/lib/hui.c
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Making it so that subtracks of composites without priorities are sorted by a case-insensitive comparision rather than a case sensitive comparison of label, which is consistent to how tracks are sorted elsewhere.
- lines changed 7, context: html, text, full: html, text
Making log transform for wig more apparent in graph, and clarifying it's really ln(x+1) rather than the log(x) you might expect.
- src/hg/lib/mdb.c
- lines changed 86, context: html, text, full: html, text
Added special features to mdbPrint to print SQL insert statements for expTable and spacial case extension for adding expIds to exisiting mdb objects.
- lines changed 43, context: html, text, full: html, text
Fixed treatment!= to be interpreted as treatment NOT EXISTS
- src/hg/lib/sqlProg.c
- lines changed 33, context: html, text, full: html, text
Added hgsqlProfile to support connecting to dbs using the profile name
- src/hg/lib/web.c
- lines changed 4, context: html, text, full: html, text
SuperTracks needed to be slReversed before displaying. Took opportunity to add warnBox to top of hgTrackUi as it should be.
- src/hg/makeDb/doc/ce6.txt
- lines changed 29, context: html, text, full: html, text
Rebuilt BlastTab tables of rn4 and ce6 to correct hgGene other org problems.
- src/hg/makeDb/doc/hg18.txt
- lines changed 82, context: html, text, full: html, text
Adding inputTrackList build, and removing some old no longer used steps from the part on the wgEncodeReg clusters.
- lines changed 712, context: html, text, full: html, text
Second pass through wgEncodeReg build doc.
- src/hg/makeDb/doc/proteins/090821.txt
- lines changed 47, context: html, text, full: html, text
Updated Reactome tables.
- src/hg/makeDb/doc/rn4.txt
- lines changed 29, context: html, text, full: html, text
Rebuilt BlastTab tables of rn4 and ce6 to correct hgGene other org problems.
- src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c
- lines changed 12, context: html, text, full: html, text
Adding -dupeLetterOk option. Closing a file left dangling open.
- src/hg/makeDb/mdbUpdate/mdbPrint.c
- lines changed 21, context: html, text, full: html, text
Added special features to mdbPrint to print SQL insert statements for expTable and spacial case extension for adding expIds to exisiting mdb objects.
- src/hg/makeDb/schema/all.joiner
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adding affyDrosDev tables to tablesIgnored
- src/hg/makeDb/trackDb/README
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Adding inputTrackTable tag to trackDb, which is used by details page of factorSource type tracks.
- src/hg/makeDb/trackDb/drosophila/dm2/affyDrosDevSignal.html
- src/hg/makeDb/trackDb/drosophila/dm2/affyDrosDevTransfrags.html
- src/hg/makeDb/trackDb/drosophila/dm3/affyDrosDevSignal.html
- src/hg/makeDb/trackDb/drosophila/dm3/affyDrosDevTransfrags.html
- src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra
- lines changed 12, context: html, text, full: html, text
making refSeq (and other tracks for cavPor3) on hide by default since there is nothing in them for the default position
- src/hg/makeDb/trackDb/human/affyExonArray.html
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Adding an HTML page for the Affy Exon track
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
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One more fileName error that Jim caught
- lines changed 21, context: html, text, full: html, text
Changed some file names that Jim noticed were inaccurate
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra
- lines changed 3, context: html, text, full: html, text
tweak ucsfBrainMethylation
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
- lines changed 65, context: html, text, full: html, text
Adding HepG2 cell line to wgEncodeReg tracks. Making room for this in the rainbow color scheme.
- lines changed 3, context: html, text, full: html, text
Adding inputTrackTable tags to wgEncodeReg subtracks that need it.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html
- lines changed 5, context: html, text, full: html, text
added display color information to description page
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
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Metadata for UNC OpenChromatin UNC FAIRE June 2010 freeze
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Metadata for Duke Open Chrom DNase June 2010 freeze
- lines changed 1, context: html, text, full: html, text
Metadata for UTA Open Chrom ChIPseq June 2010 freeze
- lines changed 1, context: html, text, full: html, text
Metadata for Broad Histone June 2010 freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
- lines changed 47, context: html, text, full: html, text
Removed some erroneous dateResubmitteds
- lines changed 7817, context: html, text, full: html, text
Metadata for Broad Histone June 2010 freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
- lines changed 3028, context: html, text, full: html, text
Updated all metadata for HAIB TFBS for June 22 freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
- lines changed 2959, context: html, text, full: html, text
Metadata for UTA Open Chrom ChIPseq June 2010 freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
- lines changed 3107, context: html, text, full: html, text
Metadata for Duke Open Chrom DNase June 2010 freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
- lines changed 1491, context: html, text, full: html, text
Metadata for UNC OpenChromatin UNC FAIRE June 2010 freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
- lines changed 37, context: html, text, full: html, text
Updated metaData to include new submissions and consolidated lab name
- lines changed 274, context: html, text, full: html, text
Added 2 new submissions to track. Changed tagAligns to Bam files; updated metaData and index.html
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 639, context: html, text, full: html, text
Added new metaData and updated orginal dates of resubmitted data
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- lines changed 4, context: html, text, full: html, text
Adding the Affy Exon track
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 1, context: html, text, full: html, text
Adding the new Caltech RNA-seq track
- lines changed 1, context: html, text, full: html, text
Adding UNC FAIRE June 2010 freeze data to hg19 and updated Open Chrom descriptions
- lines changed 1, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- lines changed 2, context: html, text, full: html, text
Adding the CSHL Long and Caltech RNA tracks
- lines changed 1, context: html, text, full: html, text
Removeing Cshl include as Cricket says it is not ready
- lines changed 91, context: html, text, full: html, text
move CSHL short to its own include file
- lines changed 1, context: html, text, full: html, text
Adding UTA ChIP data for June Freeze to hg19
- lines changed 3, context: html, text, full: html, text
Adding Broad Histone June 2010 freeze tracks
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCaltechRnaSeq.ra
- lines changed 1054, context: html, text, full: html, text
Adding the new Caltech RNA-seq track
- lines changed 95, context: html, text, full: html, text
Adding the CSHL Long and Caltech RNA tracks
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCshlLongRnaSeq.ra
- lines changed 240, context: html, text, full: html, text
Adding the CSHL Long and Caltech RNA tracks
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeHaibTfbs.ra
- lines changed 2138, context: html, text, full: html, text
Added new submissions from data freeze. Add track to Composite: ENCODE Transcription Factor Binding
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhHistone.ra
- lines changed 13, context: html, text, full: html, text
Updated short lables to 17 character length
- lines changed 1, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- lines changed 41, context: html, text, full: html, text
Added 2 new submissions to track. Changed tagAligns to Bam files; updated metaData and index.html
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhTfbs.ra
- lines changed 5, context: html, text, full: html, text
Updated short labels to 17 characters. Add track to Composite: ENCODE Transcription Factor Binding
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
- lines changed 129, context: html, text, full: html, text
Adding Broad Histone June 2010 freeze tracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra
- lines changed 1, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- lines changed 1229, context: html, text, full: html, text
Adding Broad Histone June 2010 freeze tracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.html
- lines changed 169, context: html, text, full: html, text
Adding Caltech track description
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
- lines changed 160, context: html, text, full: html, text
Adding the CSHL Long and Caltech RNA tracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
- lines changed 69, context: html, text, full: html, text
Adding UNC FAIRE June 2010 freeze data to hg19 and updated Open Chrom descriptions
- lines changed 309, context: html, text, full: html, text
Adding UTA ChIP data for June Freeze to hg19
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra
- lines changed 3, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- lines changed 969, context: html, text, full: html, text
Adding UTA ChIP data for June Freeze to hg19
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.html
- lines changed 65, context: html, text, full: html, text
Adding UNC FAIRE June 2010 freeze data to hg19 and updated Open Chrom descriptions
- lines changed 309, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra
- lines changed 649, context: html, text, full: html, text
Adding UNC FAIRE June 2010 freeze data to hg19 and updated Open Chrom descriptions
- lines changed 925, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
- lines changed 269, context: html, text, full: html, text
Adding UNC FAIRE June 2010 freeze data to hg19 and updated Open Chrom descriptions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
- lines changed 925, context: html, text, full: html, text
Adding UNC FAIRE June 2010 freeze data to hg19 and updated Open Chrom descriptions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.ra
- lines changed 1, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra
- lines changed 1, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.ra
- lines changed 1, context: html, text, full: html, text
Adding Duke DNase June 2010 freeze data to hg19 and moving composites to supertracks
- src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra
- lines changed 3, context: html, text, full: html, text
making refSeq (and other tracks for cavPor3) on hide by default since there is nothing in them for the default position
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
- lines changed 3, context: html, text, full: html, text
Edited short labels for Scripture tracks.
- lines changed 3, context: html, text, full: html, text
Changed visibility for scripture tracks to "hide".
- lines changed 3, context: html, text, full: html, text
Changed settings for scripture tracks to bed 12.
- lines changed 27, context: html, text, full: html, text
Added stuff for scripture tracks (scripture_ES, scripture_MLF, scripture_NPC).
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 1, context: html, text, full: html, text
Adding inputTrackTable tag to trackDb, which is used by details page of factorSource type tracks.
- src/hg/oneShot/freen/freen.c
- lines changed 49, context: html, text, full: html, text
Freen does some colorful stuff.
- src/hg/regulate/regClusterBedExpCfg/cellLetter.tab
- src/hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c
- lines changed 61, context: html, text, full: html, text
Adding tabList and cellLetter options. Mistakenly checked in test case for cellLetter with previous commit.
- src/hg/utils/automation/Encode.pm
- lines changed 1, context: html, text, full: html, text
Mark incoming ENCODE submissions as 'post' JUne 2010 freeze
- src/hg/utils/automation/doHgNearBlastp.pl
- src/hg/utils/automation/makefile
- lines changed 45, context: html, text, full: html, text
proper parallel list makefile
- src/hg/utils/mdbQuery/mdbQuery.c
- lines changed 6, context: html, text, full: html, text
Turning 3col to 4col output.
- lines changed 3, context: html, text, full: html, text
Making metaObject be a synonym for obj in selects.
- lines changed 1, context: html, text, full: html, text
Making ra output use metaObject rather than obj.
- lines changed 7, context: html, text, full: html, text
Improving some comments and a function name.
- lines changed 12, context: html, text, full: html, text
Adding error message when no from clause.
- src/inc/htmshell.h
- lines changed 7, context: html, text, full: html, text
SuperTracks needed to be slReversed before displaying. Took opportunity to add warnBox to top of hgTrackUi as it should be.
- src/inc/net.h
- lines changed 4, context: html, text, full: html, text
initial paraFetch work - the fast multiple connection parallel downloader
- src/lib/htmshell.c
- lines changed 5, context: html, text, full: html, text
SuperTracks needed to be slReversed before displaying. Took opportunity to add warnBox to top of hgTrackUi as it should be.
- src/lib/net.c
- lines changed 28, context: html, text, full: html, text
fixed minor bug needing to check eof right away; also added restartTotalDownloaded so that totalDownloaded gets tracked properly on auto-restart
- lines changed 18, context: html, text, full: html, text
adding date so that restarts can compare to help confirm that the file has not changed
- lines changed 7, context: html, text, full: html, text
adding URL and fileSize to status file for verification in future restarts
- lines changed 16, context: html, text, full: html, text
adding more triggers to write status file whenever 100MB of data are downloaded
- lines changed 39, context: html, text, full: html, text
added writeParaFetchStatus for both restarting failed downloads and reporting progress
- lines changed 20, context: html, text, full: html, text
more re-arranging to support retrying unfinished parts
- lines changed 80, context: html, text, full: html, text
re-arranging to support retrying unfinished parts
- lines changed 22, context: html, text, full: html, text
using tempname equal to output name with ".paraFetch" extension until download is complete, then rename the tempfile to the real name when all done
- lines changed 249, context: html, text, full: html, text
initial paraFetch work - the fast multiple connection parallel downloader
- lines changed 1, context: html, text, full: html, text
https should have been there long ago
- src/lib/tests/fetchUrlTest.c
- lines changed 44, context: html, text, full: html, text
adding capability to grab a url without the http response header embedded
- src/lib/tests/makefile
- lines changed 3, context: html, text, full: html, text
initial paraFetch utility checkin
- lines changed 3, context: html, text, full: html, text
initial paraFetch work - the fast multiple connection parallel downloader
- src/lib/tests/paraFetch.c
- lines changed 40, context: html, text, full: html, text
initial paraFetch utility checkin
- lines changed 40, context: html, text, full: html, text
initial paraFetch work - the fast multiple connection parallel downloader
- src/product/README.cvs.access
- src/product/README.local.cvs.source
- src/product/README.local.git.source
- lines changed 0, context: html, text, full: html, text
chmod -x and file name correction to README.local.git.source
- src/utils/git-reports/git-reports.c
- lines changed 2, context: html, text, full: html, text
all the way out to one million matches old cvs reports
- lines changed 2, context: html, text, full: html, text
adding more context for some big files
- lines changed 9, context: html, text, full: html, text
temporary workaround for an initial commit which has no parent
- src/utils/git-reports/makefile
- lines changed 1, context: html, text, full: html, text
allow to get arguments from parent make commands
- src/utils/paraFetch/makefile
- lines changed 21, context: html, text, full: html, text
initial paraFetch utility checkin
- src/utils/paraFetch/paraFetch.c
- lines changed 6, context: html, text, full: html, text
paraFetch utility should exit 1 on failure to let caller know
- lines changed 40, context: html, text, full: html, text
initial paraFetch utility checkin
- src/utils/qa/getGbdbBeta.csh
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Changed the copy step at the end to a move, to keep files from accumulating in the qateam home directory.
- src/utils/qa/weeklybld/buildEnv.csh
- src/utils/qa/weeklybld/buildGitReports.csh
- src/utils/qa/weeklybld/buildZip.csh
- src/utils/qa/weeklybld/cherryPickCommits.csh
- lines changed 2, context: html, text, full: html, text
error message belows with git show not git cherry-pick
- lines changed 2, context: html, text, full: html, text
adding another common error condition
- lines changed 175, context: html, text, full: html, text
first attempt at git automated patching using the cherry-pick method
- src/utils/qa/weeklybld/coBranch.csh
- lines changed 5, context: html, text, full: html, text
fixing build scripts to not use confusing var $dir
- src/utils/qa/weeklybld/doHgNearTestRobot.csh
- lines changed 2, context: html, text, full: html, text
removing unneeded single quotes around email subject in several build scripts
- src/utils/qa/weeklybld/doHgTablesTestRobot.csh
- lines changed 2, context: html, text, full: html, text
removing unneeded single quotes around email subject in several build scripts
- src/utils/qa/weeklybld/doJavaUtilBuild.csh
- lines changed 2, context: html, text, full: html, text
fix typo in doJavaUtilBuild.csh
- lines changed 3, context: html, text, full: html, text
fixing build scripts to not use confusing var $dir
- src/utils/qa/weeklybld/doLiftOverTestRobot.csh
- lines changed 1, context: html, text, full: html, text
little path fixes to these due to modifying JAVABUILD setting earlier
- src/utils/qa/weeklybld/doNewBranch.csh
- lines changed 6, context: html, text, full: html, text
check if we are on the master branch before running
- lines changed 2, context: html, text, full: html, text
removing unneeded single quotes around email subject in several build scripts
- src/utils/qa/weeklybld/doSearchRobot.csh
- lines changed 2, context: html, text, full: html, text
removing unneeded single quotes around email subject in several build scripts
- src/utils/qa/weeklybld/doTrackCheckRobot.csh
- lines changed 1, context: html, text, full: html, text
little path fixes to these due to modifying JAVABUILD setting earlier
- src/utils/qa/weeklybld/makeUserApps.csh
- lines changed 3, context: html, text, full: html, text
fixing build scripts to not use confusing var $dir
- src/utils/qa/weeklybld/tagBeta.csh
- lines changed 43, context: html, text, full: html, text
convert to git - uses special merge -s ours
- src/utils/wigCorrelate/makefile
- lines changed 1, context: html, text, full: html, text
fixing zlib dependencies in makefile
- lines changed: 35432
- files changed: 226