Commits for hiram

v235_base to v236_preview (2010-07-06 to 2010-07-13) v236

• starting ce9, fixing up phyloP run for hg19 and running phyloP for mm9
  • src/hg/makeDb/doc/ce9.txt - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm9.txt - lines changed 422, context: html, text, full: html, text
• adding bacEndCalJac3Singles
  • src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra - lines changed 8, context: html, text, full: html, text
• n need to echo commands in csh scripts
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 1, context: html, text, full: html, text
• transition cvs to git commands for trackDb build
  • src/hg/utils/automation/HgAutomate.pm - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 20, context: html, text, full: html, text
• adding ce9 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• adding gc5BaseBw track type
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 18, context: html, text, full: html, text
• turning gc5Base into a bigWig
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 14, context: html, text, full: html, text
• starting ce9 WS210
  • src/hg/makeDb/doc/ce9.txt - lines changed 106, context: html, text, full: html, text
• starting ce9 WS210
  • src/hg/makeDb/trackDb/worm/ce9/description.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce9/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce9/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce9/trackDb.ra - lines changed 8, context: html, text, full: html, text