Commits for katrina

v237_preview to v237_base (2010-07-27 to 2010-08-03) v237

• standardized longLabels (super, track & subtrack) for ENCODE Regulation track; made one fix, changed 8 to 9 in one track longLabel; removed confusing parentheses from another track longLabel
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 35, context: html, text, full: html, text
• fixed typo Brooke found in code review
  • src/hg/htdocs/ENCODE/newsarch.html - lines changed 0, context: html, text, full: html, text
• made Encode Regulation track first in Regulation group; enabled subTrack drag/reorder
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 13, context: html, text, full: html, text
• made some edits to the first sentence of description to improve clarity
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRegTfbsClustered.html - lines changed 4, context: html, text, full: html, text
• added ENCODE Data Release policy
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRegMarkEnhH3k27ac.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRegMarkEnhH3k4me1.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRegMarkEnhH3k4me3.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRegTxn.html - lines changed 8, context: html, text, full: html, text
• prepping to release Tim's metaDb change of inputType to controlId
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeHudsonalphaChipSeq.ra - lines changed 1424, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeYaleChIPseq.ra - lines changed 2151, context: html, text, full: html, text
• staging Tim's metaDb change of inputType to controlId on hgwbeta
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHudsonalphaChipSeq.ra - lines changed 1424, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeYaleChIPseq.ra - lines changed 2151, context: html, text, full: html, text
• added 6 tracks for which we are switching to using metaDb
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/makefile - lines changed 6, context: html, text, full: html, text
• adding files for tracks that we are switching to using metaDb for the metadata
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeBroadChipSeq.ra - lines changed 11164, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeCaltechRnaSeq.ra - lines changed 6759, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeChromatinMap.ra - lines changed 12139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeUwChIPSeq.ra - lines changed 12796, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeUwDGF.ra - lines changed 469, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeUwDnaseSeq.ra - lines changed 7608, context: html, text, full: html, text
• added 6 tracks for which we are switching to using metaDb
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/makefile - lines changed 6, context: html, text, full: html, text
• adding files for tracks that we are switching to using metaDb for the metadata
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeBroadChipSeq.ra - lines changed 11164, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeCaltechRnaSeq.ra - lines changed 6759, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeChromatinMap.ra - lines changed 12139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeUwChIPSeq.ra - lines changed 12796, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeUwDGF.ra - lines changed 469, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeUwDnaseSeq.ra - lines changed 7608, context: html, text, full: html, text
• changing *.new.ra to .ra for 5 tracks for which we are switching to using the metaDb table, techincally already on RR, since release tags weren't used
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 5, context: html, text, full: html, text
• copying *.ra over *.new.ra because Brian accidentally made the changes to *.ra instead of *.new.ra; getting *.ra & *.new.ra are back in sync as they should be when releasing new changes (even though this was accidentally already released because release tags weren't used
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.new.ra - lines changed 140, context: html, text, full: html, text
• copied the *.new.ra over the .ra; would normally be prep for release, but trackDb.wgEncode.ra had include lines for the *new.ra without any release tags, so already on rr
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.ra - lines changed 177, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.ra - lines changed 234, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra - lines changed 340, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 234, context: html, text, full: html, text