115531fa6aef4ce1e677bc81bf55c907102deb70 ann Fri Jul 23 15:08:32 2010 -0700 added blurb about big paper diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index b0bf373..2ccb6ba 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -27,6 +27,35 @@ <!-- start news --> <P> + <FONT FACE="courier" SIZE="3"><B>23 July 2010 - BigBed/BigWig Paper Published</B></FONT> + </P> + <P>Last summer, we announced the release of new data formats for very large data sets: BigBed + and BigWig. Read more about these data formats + <A HREF="https://lists.soe.ucsc.edu/pipermail/genome-announce/2009-July/000165.html" + TARGET=_blank>here</A>. As a follow up, we are pleased to announce that we have published a + paper on these new file formats. + + <BLOCKQUOTE> + Kent WJ, Zweig AS, Barber G, Hinrichs AS, Karolchik D. + <A HREF="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq351" + TARGET=_blank>BigWig and BigBed: enabling browsing of large distributed data sets.</A> + <EM>Bioinformatics</EM>. 2010 July 17. Published online in advance of print. + </BLOCKQUOTE> + + <P>From the abstract:<BR> + BigWig and BigBed files are compressed binary indexed files containing data at several + resolutions that allow the high-performance display of next-generation sequencing experiment + results in the UCSC Genome Browser. The visualization is implemented using a multi-layered + software approach that takes advantage of specific capabilities of web-based protocols and + Linux and UNIX operating systems files, R trees, and various indexing and compression tricks. + As a result, only the data needed to support the current browser view is transmitted rather + than the entire file, enabling fast remote access to large distributed data sets.</P> + + <P>The supplemental materials (available online) contain the technical details about the + implementation. + </P><HR> + + <P> <FONT FACE="courier" SIZE="3"><B>21 July 2010 - Free Genome Browser workshops available </B></FONT> </P>