Commits for cricket

v236_base to v237_preview (2010-07-20 to 2010-07-27) v237

• This is part of the change to add release tags to the YaleRnaSeq track
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeYaleRnaSeq.ra - lines changed 0, context: html, text, full: html, text
• Stephen from the lab says that one of the tracks should have a + afterall
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeYaleRnaSeq.new.ra - lines changed 2, context: html, text, full: html, text
• Added release tags for the YaleRnaSeq Track and pulled out the track into two files
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeYaleRnaSeq.new.ra - lines changed 88, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeYaleRnaSeq.ra - lines changed 88, context: html, text, full: html, text
• Final changes for the Yale labels to make the long labels have full words
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 6, context: html, text, full: html, text
• This is the draft of how I think the rip Antibody cv should look. This will hopefully become part of cv.ra after approval.
  • src/hg/encode/encodeValidate/config/ripAntibody.cv.ra - lines changed 1220, context: html, text, full: html, text
• This is a DAF for the YaleRNA-Seq. I think that it will change a lot from here.
  • src/hg/encode/DAFs/2.0/ydhrRnaSeq.daf - lines changed 58, context: html, text, full: html, text
• Changed the short labels to show the treatment as well.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 12, context: html, text, full: html, text
• Changed the short labels from PolyA to PolyA-
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 6, context: html, text, full: html, text
• I changed the long labels to PolyA- from Poly A
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 7, context: html, text, full: html, text
• This was really just a rename that should have been a git mv.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.html - lines changed 69, context: html, text, full: html, text
• The RRBS tracks were in an enc file instead of a wgEncodefile. I moved them from one to the other. There is one more file that should be in this commit which is the newly labeled wgEncodeHaibMethylRrbs.html. There are new tracks in the RRBS trackDb.ra and there is a new include statement in the main trackDb.
  • src/hg/makeDb/trackDb/human/hg19/encHaibMethylRrbs.html - lines changed 69, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeHaibRrbs.ra - lines changed 573, context: html, text, full: html, text
• This is a modern daf for the Yale RNA seq data that includes a description of the ddf and updates for hg19 (bam, bigwig) and the addition of rnaExtract and treatment
  • src/hg/encode/DAFs/2.0/YdhrRnaSeq.daf - lines changed 59, context: html, text, full: html, text
• This DAF is updated to look like what we have actually been using withColin and to add the Transfrags view.|
  • src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf - lines changed 6, context: html, text, full: html, text