aadf67fad3561419d2e33a16adba76d969a19b73
galt
  Sat Jul 24 00:58:50 2010 -0700
adding needed checks on query sizes against the maximum single piece size for use with -fastMap
diff --git src/jkOwnLib/gfBlatLib.c src/jkOwnLib/gfBlatLib.c
index b131414..49512ae 100644
--- src/jkOwnLib/gfBlatLib.c
+++ src/jkOwnLib/gfBlatLib.c
@@ -1479,7 +1479,7 @@
  * together again. */
 {
 int hitCount;
-int maxSize = 5000;
+int maxSize = MAXSINGLEPIECESIZE;
 int preferredSize = 4500;
 int overlapSize = 250;
 struct dnaSeq subQuery = *query;