Commits for hiram

v236_base to v237_preview (2010-07-20 to 2010-07-27) v237

• adding patch1 sequence to hg19
  • src/hg/makeDb/doc/hg19.txt - lines changed 270, context: html, text, full: html, text
• bare .out from RepeatMasker has extra space in header compared to liftUp .out file
  • src/hg/utils/twoBitMask/twoBitMask.c - lines changed 5, context: html, text, full: html, text
• bare output file from RepeatMasker has different header spacing compared to liftUp produced header
  • src/hg/makeDb/hgLoadOut/hgLoadOut.c - lines changed 5, context: html, text, full: html, text
• adding release tags to separate out different 30way multiz
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra - lines changed 81, context: html, text, full: html, text
• masked sequence available
  • src/hg/makeDb/doc/ce9.txt - lines changed 9, context: html, text, full: html, text
• adding Ensembl genes v58 to calJac3 and phyloP30way to mm9
  • src/hg/makeDb/doc/calJac3.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm9.txt - lines changed 25, context: html, text, full: html, text