\n");
hPrintf("\n");
-hPrintf("Home | ",
+hPrintf("\n");
+hPrintf("Home | ",
orgEnc, database, cartSessionVarName(), cartSessionId(cart));
if (hIsGisaidServer())
{
/* disable hgGateway for gisaid for now */
- //hPrintf("Sequence View Gateway | ", orgEnc, database);
+ //hPrintf(" Sequence View Gateway | ", orgEnc, database);
hPrintf(
- "%s | ",
+ " %s | ",
'%', '%',
cartSessionVarName(),
cartSessionId(cart),
@@ -3528,26 +3530,26 @@
else
if (hIsGsidServer())
{
- hPrintf("Sequence View Gateway | ", orgEnc, database);
+ hPrintf(" Sequence View Gateway | ", orgEnc, database);
hPrintf(
- "%s | ",
+ " %s | ",
'%', '%', "Select Subjects");
}
else
{
- hPrintf("Genomes | ", orgEnc, database, cartSessionVarName(), cartSessionId(cart));
+ hPrintf(" Genomes | ", orgEnc, database, cartSessionVarName(), cartSessionId(cart));
}
-if (cgiVarExists("hgt.psOutput"))
+if (psOutput)
{
- hPrintf("Genome Browser | ", orgEnc, database, cartSessionVarName(), cartSessionId(cart));
+ hPrintf(" Genome Browser | ", orgEnc, database, cartSessionVarName(), cartSessionId(cart));
}
if (gotBlat)
{
- hPrintf("Blat | ", uiVars->string);
+ hPrintf(" Blat | ", uiVars->string);
}
if (hIsGisaidServer())
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
database,
cartSessionVarName(),
cartSessionId(cart),
@@ -3555,7 +3557,7 @@
}
else if (hIsGsidServer())
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
database, "Table View");
}
else
@@ -3563,7 +3565,7 @@
/* disable TB for CGB servers */
if (!hIsCgbServer())
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
database, chromName, winStart+1, winEnd,
cartSessionVarName(),
cartSessionId(cart),
@@ -3573,25 +3575,31 @@
if (hgNearOk(database))
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
uiVars->string, "Gene Sorter");
}
if (hgPcrOk(database))
{
- hPrintf("PCR | ", uiVars->string);
+ hPrintf(" PCR | ", uiVars->string);
}
-hPrintf(""
- " %s | ", hgcNameAndSettings(),
+if (!psOutput)
+ {
+ hPrintf(" "
+ " %s | ", hgcNameAndSettings(),
winStart, chromName, winStart, winEnd, database, uiVars->string, "DNA");
+ }
+if (!psOutput)
+ {
/* disable Convert function for CGB servers for the time being */
if (!hIsCgbServer())
if (liftOverChainForDb(database) != NULL)
{
- hPrintf(" string, database, chromName, winStart+1, winEnd);
- hPrintf("\" class=\"topbar\">Convert | ");
+ hPrintf("\" class=\"topbar\">Convert ");
+ }
}
/* see if hgFixed.trackVersion exists */
@@ -3619,6 +3627,8 @@
hFreeConn(&conn);
}
+if (!psOutput)
+ {
if (differentWord(database,"susScr2"))
{
/* Print Ensembl anchor for latest assembly of organisms we have
@@ -3627,13 +3637,13 @@
{
hPuts("");
printEnsemblAnchor(database, NULL, chromName, winStart, winEnd);
- hPrintf("%s | ", "Ensembl");
+ hPrintf("%s ", "Ensembl");
}
else if (sameWord(database,"hg18"))
{
hPuts("");
printEnsemblAnchor(database, "ncbi36", chromName, winStart, winEnd);
- hPrintf("%s | ", "Ensembl");
+ hPrintf("%s ", "Ensembl");
}
else if (ensVersionString[0])
{
@@ -3684,7 +3694,7 @@
hPuts("");
printEnsemblAnchor(database, archive, ctgItem->contig,
ctgStart, ctgEnd);
- hPrintf("%s | ", "Ensembl");
+ hPrintf("%s ", "Ensembl");
}
}
ctgPosFree(&ctgItem); // the one we maybe used
@@ -3694,118 +3704,128 @@
{
hPuts("");
printEnsemblAnchor(database, archive, chromName, winStart, winEnd);
- hPrintf("%s | ", "Ensembl");
+ hPrintf("%s ", "Ensembl");
+ }
}
}
}
+if (!psOutput)
+ {
/* Print NCBI MapView anchor */
if (sameString(database, "hg18"))
{
- hPrintf("",
+ hPrintf(" | ",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "hg19"))
{
- hPrintf("",
+ hPrintf(" | ",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "mm8"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "danRer2"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "galGal3"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "canFam2"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "rheMac2"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "panTro2"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (sameString(database, "anoGam1"))
{
hPrintf("");
hPrintf("",
skipChr(chromName), winStart+1, winEnd);
- hPrintf("%s | ", "NCBI");
+ hPrintf("%s ", "NCBI");
}
if (startsWith("oryLat", database))
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
skipChr(chromName), winStart+1, winEnd, "UTGB");
}
if (sameString(database, "cb3"))
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
skipChr(chromName), winStart+1, winEnd, "WormBase");
}
if (sameString(database, "ce4"))
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
skipChr(chromName), winStart+1, winEnd, "WormBase");
}
if (sameString(database, "ce2"))
{
- hPrintf("%s | ",
+ hPrintf(" %s | ",
skipChr(chromName), winStart+1, winEnd, "WormBase");
}
-if (!cgiVarExists("hgt.psOutput"))
+ }
+
+if (!psOutput)
{
- hPrintf("%s | \n",cartSessionVarName(),
+ hPrintf(" %s | \n",cartSessionVarName(),
cartSessionId(cart), "PDF/PS");
}
+
+if (!psOutput)
+ {
if (wikiLinkEnabled())
{
- printf("Session | ",
+ printf(" Session | ",
cartSessionVarName(), cartSessionId(cart));
}
+ }
if (hIsGisaidServer())
{
- //hPrintf("%s | \n", "Help");
- hPrintf("%s | \n", "Help");
+ //hPrintf(" %s | \n", "Help");
+ hPrintf(" %s | \n", "Help");
}
else
if (hIsGsidServer())
{
- hPrintf("%s | \n", "Help");
+ hPrintf(" %s | \n", "Help");
}
else
{
- hPrintf("%s | \n", "Help");
+ hPrintf(" %s | \n", "Help");
}
+hPuts(" |
| ");
hPuts(" ");
hPuts(" |