File Changes for braney

v239_preview to v239_base (2010-08-24 to 2010-08-31) v239

• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 39, context: html, text, full: html, text
    fix problem with mouse cell types not getting the org right
  • lines changed 9, context: html, text, full: html, text
    is hoping that eventually he can fix this. Need to filter on organism .
• src/hg/hgGenome/import.c
  • lines changed 2, context: html, text, full: html, text
    fix a bug where if Jim's regulation multi-wiggles were selected, core was dumped
• src/hg/hgTracks/bamTrack.c
  • lines changed 3, context: html, text, full: html, text
    if the color mode is off, default to using the track color specified in trackDb
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    "New version number v239"
• src/hg/lib/hui.c
  • lines changed 2, context: html, text, full: html, text
    put fileIndex after fileName in ENCODE "..." stanzas. Make into a download link.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 196, context: html, text, full: html, text
    change from bedGraphs to bigWigs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.html
  • lines changed 5, context: html, text, full: html, text
    remove the Alignments view
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.ra
  • lines changed 107, context: html, text, full: html, text
    remove the Alignments view
  • lines changed 1, context: html, text, full: html, text
    make bamColorMode be off by default so ENCODE cell colors are displayed
  • lines changed 1, context: html, text, full: html, text
    take view out of sortOrder since it's not here anymore (fixes (null) header)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
  • lines changed 124, context: html, text, full: html, text
    change from bedGraphs to bigWigs
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v239 final build